BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486642
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46170.1 | Symbols: | Reticulon family protein | chr2:18965... 693 0.0
AT3G61560.2 | Symbols: | Reticulon family protein | chr3:22777... 689 0.0
> AT2G46170.1 | Symbols: | Reticulon family protein | chr2:18965313-18967213
FORWARD LENGTH=1138
Length=1138
Score = 693 bits (375), Expect = 0.0
Identities = 640/767 (83%), Gaps = 21/767 (3%)
Strand=Plus/Plus
Query 74 CAATGGCGGAAG-AATTGGAGAAATCTGTGCCGA-AGGAAGAATCTCTGATGGATAAGAT 131
|||||||||||| |||| || ||||||||||||| | || |||||||||||||| |||||
Sbjct 96 CAATGGCGGAAGAAATT-GAAAAATCTGTGCCGACA-GAGGAATCTCTGATGGAGAAGAT 153
Query 132 CGCTGAGAAGATCCACGATCACGATTCTTCGTCGTCGTCTGATTCCGAGCACGAGAAACC 191
| | |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||||||||
Sbjct 154 CTCCGAGAAGATTCACCATCACGATTCGTCGTCATCGTCTGAATCCGAGTACGAGAAACC 213
Query 192 AGAGTCTCCATCAGCTTTGAAGGCCAAAATATATCGGT-TGTTTGGTAGAGAGAAGCCGG 250
|| ||||| || ||| ||||||| || || |||| || ||||||| ||||||||||| |
Sbjct 214 TGATTCTCCTTCGGCTGTGAAGGCGAAGATCTATC-GTATGTTTGGCAGAGAGAAGCCTG 272
Query 251 TTCACAAGGTTCTCGGTGGTGGATTACGTACC-GCTGATGTGTTCTTGTGGAGGGATAAA 309
||||||||||||||||||||||| | | || |||||||||||||||||||||||||||
Sbjct 273 TTCACAAGGTTCTCGGTGGTGGA--AAG--CCTGCTGATGTGTTCTTGTGGAGGGATAAA 328
Query 310 AAACTCTCAGCTTCTGTTCTTGGTGTAGCAACTGCGATATGGGTTCTGTTTGAACTGGTT 369
||||| |||| | ||||||||||||| || ||||| || ||||||||||| || ||||||
Sbjct 329 AAACTATCAGGTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTGTTCGAGCTGGTT 388
Query 370 GAGTATCATTTCTTGAGTCTTGTGTGTCACATTTTGATATTTGCTCTCGCAGCCCTGTTT 429
||||||||||| ||||||||| |||||||||||| |||| | ||||| | || ||| |||
Sbjct 389 GAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTTGGAGGCCTCTTT 448
Query 430 TTATTGTCCAATGCTCATGC-CTTTATGAACAAGACGCCACCTA-AAATACCTGAAATCC 487
|| | |||||||||||| | ||| || |||||||| |||| | |||| || |||||||
Sbjct 449 TTGTGGTCCAATGCTCACACACTT-ATCAACAAGACTTCACC-ACAAATTCCAGAAATCC 506
Query 488 ATATTAAAGAGGAA-CATTTCCTTATGATTGTTTCTGCACTTAGAAACGAGCTGAACCAA 546
|| || ||||| | ||||||| || ||| |||| | || |||||||| || ||||||
Sbjct 507 ATGTTCCCGAGGAGGC-TTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAACTAAACCAA 565
Query 547 GCCTTTGTTATCCTAAGGAGCATTGCCTTAGGAAGGGACTTGAAAAAATTTCTGATGGTG 606
|| |||||||||||| | |||||||| |||||||||||| | |||||||| ||||||||
Sbjct 566 GCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTAAAAAAATTCCTGATGGTT 625
Query 607 GTTGTTGGGCTGTGGATAATCTCTGTCGTGGGTAACTGGTTCAACTTCTTGACTCTGCTA 666
||||| || || ||||| ||||| || ||||| || |||||||| ||| ||||| || |
Sbjct 626 GTTGTCGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTTCAATTTCCTGACTTTGGTG 685
Query 667 TACATCTGTTTTGTGGTGTTGCATACAGTACCAATGTTGTATGAGAAACATGAGGACAAG 726
||||| || || ||| | ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 686 TACATTTGCTTCGTGATATTGCACACAGTCCCAATGTTGTATGAGAAACACGAGGACAAG 745
Query 727 GTAGATCCAGTTG-CAGAGAA-GACGTTGAAGGAGCTGAAGAAACATTACATGGTGTTCG 784
|| |||||| ||| ||||||| | | |||||||| || ||||||| || |||| ||||
Sbjct 746 GTTGATCCA-TTGGCAGAGAAAG-CAATGAAGGAGTTGCAGAAACAGTATGTGGTTTTCG 803
Query 785 ATGAGAAGGTTCTTTCTAAGCTTCCTATTGCTTCCCTTAAGGCAAAG 831
|||| |||||||| |||||| |||| |||||||| || |||||||||
Sbjct 804 ATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAG 850
> AT3G61560.2 | Symbols: | Reticulon family protein | chr3:22777848-22779171
FORWARD LENGTH=865
Length=865
Score = 689 bits (373), Expect = 0.0
Identities = 431/458 (94%), Gaps = 7/458 (2%)
Strand=Plus/Plus
Query 6 TATTTCACCATTCGTtctctctctctctctAC-CTTCACGTTGGATCGAAATCGGGTAAA 64
|||||| || ||||||||||| |||||||| | |||||||||||||||||||||| |||
Sbjct 1 TATTTCTCCGTTCGTTCTCTCCCTCTCTCT-CGCTTCACGTTGGATCGAAATCGGACAAA 59
Query 65 AGTAAACGACAATGGCGGAAGAATTGGAGAAATCTGTGC-CGAAGGAAGAATCTCTGATG 123
||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 60 AGTAAACGACAATGGCGGAAGAATTGGAGAAATCTATGCAC-AAGGAAGAATCTCTGATG 118
Query 124 GATAAGATCGCTGAGAAGATCCACGATCACGATTCTTCGTCGTCGTCTGATTCCGAGCAC 183
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 GAGAAGATCGCTGATAAGATCCACGATCACGACTCTTCGTCGTCGTCTGATTCCGAGCAC 178
Query 184 GAGAAACCAGAGTCTCCATCAGCTTTGAAGGCCAAAATATATCGGTTGTTTGGTAGAGAG 243
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 179 GAGAAACCAGAGTCTCCGTCAGCTTTGAAGGCCAAGATATATCGTTTGTTTGGTAGAGAG 238
Query 244 AAGCCGGTTCACAAGGTTCTCGGTGGTGGATTACGTACCGCTGATGTGTTCTTGTGGAGG 303
||||| ||||| ||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct 239 AAGCCTGTTCATAAGGTTCTCGGTGGTGGCTTAC---CGGCTGATGTGTTCTTGTGGAGG 295
Query 304 GATAAAAAACTCTCAGCTTCTGTTCTTGGTGTAGCAACTGCGATATGGGTTCTGTTTGAA 363
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 GACAAAAAACTCTCAGCTTCTGTTCTTGGTGTAGCGACTGCGATATGGGTTCTGTTTGAA 355
Query 364 CTGGTTGAGTATCATTTCTTGAGTCTTGTGTGTCACATTTTGATATTTGCTCTCGCAGCC 423
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 TTGGTTGAGTATCATTTCTTGAGTCTTGTGTGTCACATTTTGATATTCGCTCTCGCAGCC 415
Query 424 CTGTTTTTATTGTCCAATGCTCATGCCTTTATGAACAA 461
||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTGTTTTTATTGTCCAATGCTCATGCCTTTATGAACAA 453
Score = 329 bits (178), Expect = 3e-89
Identities = 219/237 (92%), Gaps = 10/237 (4%)
Strand=Plus/Plus
Query 603 GGTGGTTGTTGGGCTGTGGATAATCTCTGTCGTGGGTAACTGGTTCAACTTCTTGACTCT 662
||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 638 GGTGGTTTTTGGGCTGTGGATAATCTCGGTTGTGGGAAACTGGTTCAACTTCTTGA---- 693
Query 663 GCTATACATCTGTTTTGTGGTGTTGCATACAGTACCAATGTTGTATGAGAAACATGAGGA 722
| | | | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 694 -C--T-C-T-TGTTTTGTGGTGTTACATACAGTACCAATGTTGTATGAGAAACATGAGGA 747
Query 723 CAAGGTAGATCCAGTTGCAGAGAAGACGTTGAAGGAGCTGAAGAAACATTACATGGTGTT 782
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 CAAGGTAGATCCAGTGGCAGAGAAGACGTTGAAGGAGCTGAAGAAACATTACATGGTGTT 807
Query 783 CGATGAGAAGGTTCTTTCTAAGCTTCCTATTGCTTCCCTTAAGGCAAAGTTGGGTTA 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 808 TGATGAGAAGGTTCTTTCTAAGCTTCCTGTTGCTTCCCTTAAGGCAAAGTTGGGTTA 864
Score = 165 bits (89), Expect = 8e-40
Identities = 101/107 (94%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 497 AGGAACATTTCCTTATGATTGTTTCTGCACTTAGAAACGAGCTGAACCAAGCCTTTGTTA 556
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 454 AGGAACATTTCCTTATGATTGTTTCTGCACTGAGAAACGAGCTGAACCAGGCCTTTGTTA 513
Query 557 TCCTAAGGAGCATTGCCTTAGGAAGGGACTTGAAAAAATTTCTGATG 603
| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 514 TTTTAAGGAGCATTGCCTTAGGAAGGGACTTGAAGAAATTTCTCATG 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5