BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486649
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61610.1 | Symbols: | Galactose mutarotase-like superfamily... 1707 0.0
> AT3G61610.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr3:22799027-22801205 FORWARD LENGTH=1583
Length=1583
Score = 1707 bits (924), Expect = 0.0
Identities = 1063/1129 (94%), Gaps = 14/1129 (1%)
Strand=Plus/Plus
Query 370 GAAAATGGGTCATTACGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGA 429
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GAAAATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGA 509
Query 430 TTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATTAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 510 TTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATAAG 569
Query 490 TTTACATGGAGGACAAGTGGTTTCATGGAGGAATGAACAAGGAGAAGAGCTTCTTTTCAC 549
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 570 TTTACATGGAGGACAAGTGATTTCATGGAGGAATGAACTAGGCGAAGAGCTTCTTTTCAC 629
Query 550 CAGCAACAAGGCTTTATTCAAACCTCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTA 609
||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 630 TAGCAATAAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTA 689
Query 610 TCCTCAGTTTGGTGATTGTGGATTACTGGATCTACATGGGTTTGCAAGGAACAAAATTTG 669
||| |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 690 TCCGCAGTTTGGGGATTGTGGATCACTGGATCAACATGGGTTTGCAAGGAACAAAATTTG 749
Query 670 GGTTATCGATGAGAATCCACCTCCACTTTACTCAAACGAATCCACT-GGAAAATCCTTTG 728
||| ||||||||||| |||||||||||| |||||||||||||| | |||||||||||||
Sbjct 750 GGTAATCGATGAGAACCCACCTCCACTTAACTCAAACGAATCCT-TAGGAAAATCCTTTG 808
Query 729 TTGATCTTCTTTTGAAATCATCAGAAGATGACTTAAAGCTATGGCCTCATAGTTTCGAGT 788
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 809 TTGATCTTCTTTTGAAACCATCAGAAGATGACTTAAAGCAATGGCCTCATAGTTTCGAGT 868
Query 789 TCCGTCTCAGGGTTTCGCTTGCTGTAGATGGCGACTTAACGTT-AGTTTCTAGGATTAGA 847
||||||| |||||||||||||||||||||||||||||||| || | || || ||||||||
Sbjct 869 TCCGTCTTAGGGTTTCGCTTGCTGTAGATGGCGACTTAACATTGACTT-CTCGGATTAGA 927
Query 848 AACATCAATGGCAAGCCCTTTAGCTTCTCATTTGCATATCACACTTACCTCTCTGTCTCT 907
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 928 AACATCAATGGCAAGCCTTTTAGCTTCTCATTTGCATATCACACCTACCTCTCTGTCTCT 987
Query 908 GACATAAGTGAAGTGAGAATTGAAGGGTTGGAAACATTGGACTACTTAGACAACCTCAGC 967
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 988 GACATAAGTGAAGTGAGAATTGAAGGGTTGGAGACATTGGACTACTTAGACAACCTCAGC 1047
Query 968 AAAAGAGAGCTTTTGACAGAACAAGGCGATGCAATAACCTTTGAATCCGAGATGGACCGG 1027
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CAAAGACAGCTTTTGACTGAACAAGGCGATGCAATAACCTTTGAATCCGAGATGGACCGG 1107
Query 1028 ACTTACCTTAGATCACCAAAGGTGGTTGCAGTTCTTGATCATGAACGGAAAAGAACATAT 1087
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ACATACCTTAGATCACCAAAGGTGGTTGCAGTTCTTGATCATGAACGGAAAAGAACATAT 1167
Query 1088 GTTATCGGAAAAGAAGGTCTTCCAGACACTGTGGTGTGGAATCCATGGGAGAAGAAATCG 1147
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1168 GTTATCGGAAAGGAAGGACTTCCAGACACCGTGGTGTGGAATCCATGGGAGAAGAAATCG 1227
Query 1148 AAAACAATGGCGGATTTTGGGGATGATGAGTACAAAACCATGCTTTGTGTGGATGGTGCA 1207
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 1228 AAAACAATGGCGGATTTTGGTGATGAAGAGTACAAAAGCATGCTTTGTGTGGATGGTGCA 1287
Query 1208 GCAGTTGAGAGACCGATCACTTTGAAGCCAGGAGAAGAATGGACCGGCCGGCTAATGTTG 1267
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1288 GCAGTGGAGAGACCGATCACTTTGAAGCCAGGAGAAGAATGGACCGGCCGGCTAATATTG 1347
Query 1268 ACAGCTGTTAAATCCAGTTTCTGCTTCGATCAACTCGAACTACAGAGCAAAGGATTCTGA 1327
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1348 ACCGCTGTTAAATCCAGTTTCTGCTTCGATCAACTCGAACTACAGAGCAAGGGATTCTGA 1407
Query 1328 CTCTACTCTGCAGTTTCTGCATGCAACAGTGGAAGAGCAGAGGCACCGTTTCTATTAATT 1387
||||| | |||||| |||||||| ||||||||||||| |||||||||| ||| |
Sbjct 1408 CTCTA----G---TTTCTGTATGCAACATTGGAAGAGCAGAGCCACCGTTTCTTTTA-T- 1458
Query 1388 CTCTTTATTTT-GTTGATTCTCGTTTTCTCACAGTAGAGCTTATGAGCTGGTGATTTCTC 1446
|||||| |||| ||||||||| ||||| ||||| |||||||||||| |||||||||||||
Sbjct 1459 CTCTTTCTTTTTGTTGATTCTTGTTTTATCACATTAGAGCTTATGACCTGGTGATTTCTC 1518
Query 1447 AGACCAGTCTCGTGATGTAGTGACAGTAAAAGCCTCTGGTCtttttttt 1495
|||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1519 AGACCAGTCTTGTGATGTAGTGACAGAAAAAGCCTCTGGTCTTTTTTTT 1567
Score = 185 bits (100), Expect = 9e-46
Identities = 119/128 (93%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1 CTTAAATTCACCAATTAATTAATCTCTTCCTTTAAAGATAAACTCTCAAGTTCATCAAAC 60
|||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CTTAAATTCAACAAGTATTTAATCTCTTCCTTTAAATATAAACTCTCAAGTTCATCAAAC 60
Query 61 TGTTTCCATAATAACTAGTTTATTCTTTTGTTCAGATCCCATTTAATAAAGCAAACCTGA 120
||||||||||| ||||||||| ||||||| ||||||||| |||| |||||||||||||||
Sbjct 61 TGTTTCCATAAGAACTAGTTT-TTCTTTTCTTCAGATCCAATTTTATAAAGCAAACCTGA 119
Query 121 GATTTTTA 128
||||||||
Sbjct 120 GATTTTTA 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5