BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486650
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family pro... 1533 0.0
> AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family protein
| chr3:22801221-22803111 REVERSE LENGTH=988
Length=988
Score = 1533 bits (830), Expect = 0.0
Identities = 898/930 (97%), Gaps = 7/930 (1%)
Strand=Plus/Plus
Query 1 CCTAATCTTTAGGTTGTCGACACTCTTTTCAGTTCTCTCGACGCCGTCCATCACCCTCCG 60
||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 CCTAATCTTTATGTTGTCGACACTC-TTTCAGTTCTCTCGACGCCGTCCATCGCCCTCCG 59
Query 61 TCATATCGCCGCCGC--AAGTACAGACAGAGAGAGTTCACAACAATGGAGTACGTAAACC 118
||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 60 TCATATCGCCGCCGCTAAAGTACTGGC--AGAGAGTTCACAACAATGGAGTACGTAAACC 117
Query 119 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 177
Query 179 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 237
Query 239 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 297
Query 299 ATGCAGTGGTGCTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGCAGTGGTGTTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 357
Query 359 AGAAATTTGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAAATTCGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 417
Query 419 GCATATTAACCGAATTGATGCCTCATTCTCAGATTGACATTTTCCTTCAGGTTCTACAAG 478
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 418 GCATATTAACCGAATTGATGCCTCACTCTCAGATCGATATTTTCCTTCAGGTTCTACAAG 477
Query 479 CTGATGGAGGAACAAGATCAGCATGTATCAATGCCGCGACTCTAGCTCTCGCAGATGCTG 538
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 478 CTGATGGAGGAACAAGATCAGCTTGTATCAATGCCGCGACTCTAGCTCTAGCAGATGCTG 537
Query 539 GAATTCCAATGCGTGATCTTGCTGTTTCATGTAGTGCTGGGTATTTAAACAGTACTCCTC 598
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 538 GAATTCCAATGCGTGATCTCGCTGTTTCCTGTAGTGCTGGATATTTAAACAGTACTCCTC 597
Query 599 TTCTGGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACAGTCGGTATTC 658
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 TTCTTGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACCGTCGGTATTC 657
Query 659 TACCTAAATTAGACAAAGTGACACTCCTTCAGATGGATGCGAAGTTACCGATGGAAACAT 718
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 658 TACCTAAATTAGACAAAGTGTCACTCCTTCAGATGGATGCCAAGTTACCGATGGAAACAT 717
Query 719 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGTAAGGCAATTGCAGAGAGAATACGCG 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGCAAGGCAATTGCAGAGAGAATACGCG 777
Query 779 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 837
Query 839 TAGAGAAAAAA-CATAAAAGCTCCAAGATTTTTGTTAATTAGATATTGCTGTTGTTTTTG 897
||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 838 TAGAGAAAAAAACGTAAA-GCTCCAAGATTTTTGTTAATTAGATTTTGCTGTTGTTTGTG 896
Query 898 GAAGTTGAGGATCAAAAGCTAGAAATGCAA 927
|||||||||||| ||||||||| | |||||
Sbjct 897 GAAGTTGAGGATAAAAAGCTAGTAGTGCAA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5