BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486650 Length=927 Score E Sequences producing significant alignments: (Bits) Value AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family pro... 1533 0.0 > AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family protein | chr3:22801221-22803111 REVERSE LENGTH=988 Length=988 Score = 1533 bits (830), Expect = 0.0 Identities = 898/930 (97%), Gaps = 7/930 (1%) Strand=Plus/Plus Query 1 CCTAATCTTTAGGTTGTCGACACTCTTTTCAGTTCTCTCGACGCCGTCCATCACCCTCCG 60 ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1 CCTAATCTTTATGTTGTCGACACTC-TTTCAGTTCTCTCGACGCCGTCCATCGCCCTCCG 59 Query 61 TCATATCGCCGCCGC--AAGTACAGACAGAGAGAGTTCACAACAATGGAGTACGTAAACC 118 ||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 60 TCATATCGCCGCCGCTAAAGTACTGGC--AGAGAGTTCACAACAATGGAGTACGTAAACC 117 Query 119 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 177 Query 179 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 237 Query 239 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 297 Query 299 ATGCAGTGGTGCTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 358 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATGCAGTGGTGTTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 357 Query 359 AGAAATTTGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 418 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AGAAATTCGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 417 Query 419 GCATATTAACCGAATTGATGCCTCATTCTCAGATTGACATTTTCCTTCAGGTTCTACAAG 478 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 418 GCATATTAACCGAATTGATGCCTCACTCTCAGATCGATATTTTCCTTCAGGTTCTACAAG 477 Query 479 CTGATGGAGGAACAAGATCAGCATGTATCAATGCCGCGACTCTAGCTCTCGCAGATGCTG 538 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 478 CTGATGGAGGAACAAGATCAGCTTGTATCAATGCCGCGACTCTAGCTCTAGCAGATGCTG 537 Query 539 GAATTCCAATGCGTGATCTTGCTGTTTCATGTAGTGCTGGGTATTTAAACAGTACTCCTC 598 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 538 GAATTCCAATGCGTGATCTCGCTGTTTCCTGTAGTGCTGGATATTTAAACAGTACTCCTC 597 Query 599 TTCTGGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACAGTCGGTATTC 658 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 598 TTCTTGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACCGTCGGTATTC 657 Query 659 TACCTAAATTAGACAAAGTGACACTCCTTCAGATGGATGCGAAGTTACCGATGGAAACAT 718 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 658 TACCTAAATTAGACAAAGTGTCACTCCTTCAGATGGATGCCAAGTTACCGATGGAAACAT 717 Query 719 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGTAAGGCAATTGCAGAGAGAATACGCG 778 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 718 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGCAAGGCAATTGCAGAGAGAATACGCG 777 Query 779 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 837 Query 839 TAGAGAAAAAA-CATAAAAGCTCCAAGATTTTTGTTAATTAGATATTGCTGTTGTTTTTG 897 ||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||| || Sbjct 838 TAGAGAAAAAAACGTAAA-GCTCCAAGATTTTTGTTAATTAGATTTTGCTGTTGTTTGTG 896 Query 898 GAAGTTGAGGATCAAAAGCTAGAAATGCAA 927 |||||||||||| ||||||||| | ||||| Sbjct 897 GAAGTTGAGGATAAAAAGCTAGTAGTGCAA 926 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45311200594 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5