BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486651
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61630.1 | Symbols: CRF6 | cytokinin response factor 6 | chr... 1624 0.0
> AT3G61630.1 | Symbols: CRF6 | cytokinin response factor 6 | chr3:22805180-22806527
FORWARD LENGTH=1348
Length=1348
Score = 1624 bits (879), Expect = 0.0
Identities = 1195/1335 (90%), Gaps = 72/1335 (5%)
Strand=Plus/Plus
Query 26 tctctttctctctGCAAATTCAAAACAGTGaaaaaaa---CTC-TC--TTTTTAA----- 74
||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 18 TCTCTCTCTCTCTGCAAATTCAAAACAGTGAAAAAAACCTCTCTTCATTTTTTAACTCCC 77
Query 75 ---CTCTCTC-C-ATCTATGGAGAGACGAACGAGAAGAGTCAAGTTCACAGAGCATCGTA 129
||||||| | ||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 78 TCTCTCTCTCTCTCTCTATGGAGAGACGAACGAGACGAGTGAAGTTCACAGAGAATCGTA 137
Query 130 CGGTCACACACGTAGCAGCTAAACCATCCAACGGCTCTCCAAGACTGGTCCGTATCACTG 189
|||||||| |||||||||||| |||||| ||||| ||||| |||||||||||||||||||
Sbjct 138 CGGTCACAAACGTAGCAGCTACACCATCTAACGGGTCTCCGAGACTGGTCCGTATCACTG 197
Query 190 TTACTGATCCTTTCGCTACTGACTCGTCTAGCGACGACGACG---ACAACAACGTCACGA 246
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 198 TTACTGATCCTTTCGCTACTGACTCGTCTAGCGACGACGACGACAACAACAACGTCACGG 257
Query 247 TGGCTCCACGAGTGAAACGATACGTGGAGGAGATTAGATTCTGTCAAGGTG-A--GTCTT 303
||| |||| ||||||||||||||||| |||||||||||||||| ||||||| | ||||
Sbjct 258 TGGTTCCAAGAGTGAAACGATACGTGAAGGAGATTAGATTCTGCCAAGGTGAATCTTCTT 317
Query 304 CGTCCACCGCGGCGAGAAAAGCTAAGCACAAGGCGGA-GAAAGC--CGTGGTTGTTGATG 360
| |||||||||||||| |||| ||||||||||| ||| |||||| ||||||| ||||
Sbjct 318 CCTCCACCGCGGCGAGGAAAGGTAAGCACAAGGAGGAGGAAAGCGTAGTGGTTGAAGATG 377
Query 361 ACGTGTCGACGTCGGTGAAGCCTAAGAAGTACAGAGGCGTGAGACAGAGACCTTGGGGAA 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 378 ACGTGTCGACGTCGGTGAAGCCTAAAAAGTACAGAGGCGTGAGACAGAGACCTTGGGGAA 437
Query 421 AATTCGCGGCGGAGATTAGAGATCCGTCGAGCCGTACTCGGATTTGGCTTGGGACTTTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AATTCGCGGCGGAGATTAGAGATCCGTCGAGCCGTACTCGGATTTGGCTTGGGACTTTTG 497
Query 481 TCACGGCAGAGGAAGCTGCTATAGCTTACGATAGAGCCGCGATTCATCTCAAAGGACATA 540
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 498 TCACGGCGGAGGAAGCTGCTATAGCGTACGATAGAGCCGCGATTCATCTCAAAGGACCTA 557
Query 541 AAGCACTGACGAATTTTCTAACTCCGCCGACGACGACGACGCCGACGCCGGTTATCGATC 600
|||| || |||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct 558 AAGCGCTCACGAATTTCCTAACTCCGCCGACG-C--C-A-----ACGCCGGTTATCGATC 608
Query 601 TCCAAACGGTTTCCGCATGCGATTCCGGTAGAGATTCTCGCCAGAGCCTTCATTCTCCAA 660
|||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| || |
Sbjct 609 TCCAAACGGTTTCCGCCTGCGATTACGGTAGAGATTCTCGGCAGAGCCTTCATTCACCGA 668
Query 661 CCTCTGTTCTAAGATTCAACGTCAACGAGGAAACAGAGCATGAGATTGAACCGATCGAGC 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 669 CCTCTGTTCTAAGATTCAACGTCAACGAGGAAACAGAGCATGAGATTGAAGCGATCGAGC 728
Query 721 TATCTCCGGAGAGAAAGTCGACGGTTTTAAAAGAAGAAGAAGAAACGTCGGCGAGTTTGG 780
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 729 TATCTCCGGAGAGAAAGTCGACGGTTATAAAAGAAGAAGAAGAATCGTCGGCGGGTTTGG 788
Query 781 TGTTCCCGGATCCGTATCTGTTACCGGATTTATCTCTCGCCGGCGAGTGTTTTTGGGATA 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 789 TGTTCCCGGATCCGTATCTGTTACCGGATTTATCTCTCGCCGGCGAATGTTTTTGGGATA 848
Query 841 CCGAAATTGCCCCTGACCTTCTGTTTCTCGATGAAGAAATCAAAATCCAATCAACGTT-- 898
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 849 CCGAAATTGCCCCTGACCTTTTGTTTCTCGATGAAGAAACCAAAATCCAATCAACGTTGT 908
Query 899 -AGCAAACACAGAGATTTCAAAACAAGGAGAAAACGAATCTGAAGATTTCTCGTTTAGCT 957
| ||||||||||| |||| |||||||||||||||||| ||||||||||| |||| | |
Sbjct 909 TACCAAACACAGAGGTTTCGAAACAAGGAGAAAACGAAACTGAAGATTTCGAGTTTGGTT 968
Query 958 TGATTGATGATTTCGAGTCTTCTTCATGGGATGTGGATAATTTCTTCGACCATCATCGTC 1017
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 969 TGATTGATGATTTCGAGTCTTCTCCATGGGATGTGGATCATTTCTTCGACCATCATCATC 1028
Query 1018 A-TCAT-C-ACT------CT-TTCGATTAAGGGGA--TTTTT-TGTGGTGATGATGACGT 1064
| || | | | | || ||| || ||||| ||||| |||||||||||||||||
Sbjct 1029 ACTCTTTCGATTAAAAATCTCTTCTTTTTTGGGGAAATTTTTGTGTGGTGATGATGACGT 1088
Query 1065 GGATGCATCGTGACCGTCGGCTTACCGTTTT-AGTCTGAATGACGTGGACTGTTCAGATC 1123
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1089 GGATACATCGTGACCGTCGGCTTACCTTTTTTAGTCTGAATGACGTGGACTGTTCAGATC 1148
Query 1124 AACTGaa----aaa---aaTAA--CTAGAGTTTTGTTTTATTTATTTGTGGGTAAATATT 1174
||||||| ||| || || |||| ||||||||||||| |||||||||||||||||
Sbjct 1149 AACTGAAGCGCAAACCCAAAAAAACTAGGGTTTTGTTTTATTAATTTGTGGGTAAATATT 1208
Query 1175 TTAGTTAAGAAGA---TAAGTATGTTAAATGTTTATCAAGGTTTTGACCTTTTAAGACTT 1231
||||||||||||| |||||||||||| ||||||||||||||| ||||||| | ||
Sbjct 1209 TTAGTTAAGAAGAAGATAAGTATGTTAA-TGTTTATCAAGGTTTGGACCTTTC--G--TT 1263
Query 1232 TCGTTTTTTGGTTCCTCACTCTGAGATTGTCTCAACGGTAGGAAGCAGTATATAAATGTG 1291
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 --GTTTT--GGTTCCTCTCTCTGAGATTGTCTCAACGGTAGGAAGCAGTATATAAATGTG 1319
Query 1292 TTTCTGTGTCTATAA 1306
||||| |||||||||
Sbjct 1320 TTTCTATGTCTATAA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5