BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486654

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61660.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   466    7e-131


> AT3G61660.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G46375.1); 
Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22816152-22816541 
FORWARD LENGTH=390
Length=390

 Score =  466 bits (252),  Expect = 7e-131
 Identities = 347/389 (89%), Gaps = 21/389 (5%)
 Strand=Plus/Plus

Query  1    ATGGTTGTTGATGATGATCGTATACTATGGGATTGTGGAAGTCCACTCTATGATTCCTAC  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTTGATGATGATGATCGTATACTATGGGATTGTGGAAGTCCACTCTATGATTCCTAC  60

Query  61   GAGCTCGTCTCTCTTACTCACATCATCGAACGCCATTTCATGTCTCTCCCTTCTCTTGCC  120
            |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct  61   GAGCTCGTTTCTCTTACTCACATCATTGAACGCCATTTCATGTCTCTACCTTCTCTTGCT  120

Query  121  GGCGCCGGAAAAGTTTGCTGTTCTCGATCACCGTCTGATCTGGGGGAAATTGCCAATCGC  180
            |||||||||||||||||||| ||||||  ||||||||||||||  ||||  |||||||| 
Sbjct  121  GGCGCCGGAAAAGTTTGCTGCTCTCGAAGACCGTCTGATCTGGAAGAAAAGGCCAATCGT  180

Query  181  GCGGCCAGCACCGTCGTTGATCTGTGTTGTTCCTCTGATTCGACGACTGGTAAATTATTG  240
            | ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  181  GGGGCCAACACCGTCGTTGATCTGTGTTGTTCCTCTGATTCGACGACTGGTAAACTGTTG  240

Query  241  TGCGGTGCTTTTGGAACCAAATGGTGgaagagaaag-aaaa-ac--a--c---cg---a-  287
            |||||||||||||||||||||||||||||||||||| |||| ||  |  |   ||   | 
Sbjct  241  TGCGGTGCTTTTGGAACCAAATGGTGGAAGAGAAAGCAAAACACCGAAGCTGTCGTCGAT  300

Query  288  -----caagaagaagaagaaga-T--GTTTTGTCGGATCTTCTCTAAGATAAGGATTCCT  339
                 ||| || |||||||||| |  ||||||||||||| ||||||||||||||||| ||
Sbjct  301  AATTACAACAACAAGAAGAAGAATATGTTTTGTCGGATCCTCTCTAAGATAAGGATTTCT  360

Query  340  ACAACAAGATCTGGTTCTTCGAAGATGTG  368
            |||||||||||||||||||||||||||||
Sbjct  361  ACAACAAGATCTGGTTCTTCGAAGATGTG  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17292105656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5