BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486655
Length=2615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61670.1 | Symbols: | Protein of unknown function (DUF3133)... 3711 0.0
> AT3G61670.1 | Symbols: | Protein of unknown function (DUF3133)
| chr3:22818589-22822020 FORWARD LENGTH=2873
Length=2873
Score = 3711 bits (2009), Expect = 0.0
Identities = 2366/2528 (94%), Gaps = 65/2528 (3%)
Strand=Plus/Plus
Query 119 CAGATAGCATTTTCCTCTGT-CTTTGGCTCTTTGTGAACTT-CTCCTTATTCCGGTTTGG 176
|||| ||| ||||||||||| |||| |||||||||| || |||||| |||||||||||
Sbjct 175 CAGACAGCGTTTTCCTCTGTCCTTT-GCTCTTTGTGGGTTTACTCCTTCTTCCGGTTTGG 233
Query 177 GTTTCCCGAGAAAATCTAGCTAGAAAAAAGAAGGGATCCAGTAGCAGAACCAGAAGC--- 233
| ||||||| |||| | ||||||||||||||||||||||| | |||||
Sbjct 234 ATATCCCGAG-----CTAG-T-----AAAGAAGGGATCCAGTAGCAGAAGCTGAAGCTAA 282
Query 234 TAAACCCAATCAAAGAGAAAGCTCTCTGAAAC-TCAGACGTTTTCTGGGTTCG-TTTAAT 291
|||||||||||| ||||||||||||||| ||| |||| ||||||||||| | ||||||
Sbjct 283 TAAACCCAATCATAGAGAAAGCTCTCTG-AACAAAAGACATTTTCTGGGTTTGTTTTAAT 341
Query 292 TGAAAAGAAATGGCTGATTCAACCAAAGTAAGGCTAGTTCGTTGCCCAAAATGCGAGAAT 351
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 342 TAAAAAGAAATGGCCGATTCGACCAAAGTAAGGCTAGTTCGTTGCCCAAAATGCGAGAAT 401
Query 352 CTCTTATCAGAGCCTGAAGATTCCCCCTTTTTCCAGTGTGGTGGCTGCTTCACCGTTCTT 411
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 402 CTCTTATCAGAGCCTGAAGATTCTCCCTTTTTCCAGTGCGGTGGCTGCTTCACCGTTCTT 461
Query 412 CGTGCCAAAATCAAGGAGCGTGAAGCAGATTCTGTTTCAGTCAAGTCCGTTGAAGATAAA 471
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 462 CGTGCCAAAACCAAGGAGCGTGAAGCAGATTCTGTTTCAGTCAAGTCCGTTGAAGATACA 521
Query 472 GCCAAACCAATTTCAGCTAACTCTACTAGTTCCCCAGAGAAAGCAAT-TGTGGATTCTAG 530
|||||||| |||||| |||||||||||||||||||||| | ||||||||||
Sbjct 522 GCCAAACCGGTTTCAG---------CTAGTTCCCCAGAGAAAGCAATAT-TGGATTCTAG 571
Query 531 TGAAACTTCATCTGACTCTGATGTTCCATCTTTGAGACACCACCAAAATGTTGTTCCTGT 590
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 572 TGAAACTTCATCTGACTCTGATGTTCCATCTTTGAGACACCACCATAATGTTGTTCCTGT 631
Query 591 TGATGTTGAGAGTGATCCTGGTTCAAAA------------GAACAAGGTAACAGATC--T 636
||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 632 TGATGTTGAGAGTGATCCTTGTTCAAAACCTTCTTCTCTTGAACAAGGTAACAGATCTAT 691
Query 637 A-TATTAGGGGATAAAGATGACCTTAAATCTCAATC-GGG-GA-GACAAGACTCTGGTTT 692
| |||||||||||||||||||||||||||||||||| ||| || |||||| || ||||
Sbjct 692 ATTATTAGGGGATAAAGATGACCTTAAATCTCAATCAGGGAGACAACAAGATTCGGGTTG 751
Query 693 GGATCGGTTAAGGAAAAGAACAACTAAGAGATGTGATTCTGAAAGTGTCATCAACAGATT 752
||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 752 GGATCGGTTTAGGAAAAGAACAACCAAGAGATGTGATTCTCAAAGTGTCATCAACAGATT 811
Query 753 ATCCACTTCAAGGCATCCTTGTGATGAAGGCACTTCTTCTTCAGCTAACTACTTTCCAGA 812
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 812 ATCCACTTCTAGGCATCCTTGTGATGAAGGCACTTCTTCTTCAGCAAACTACTTTCCAGA 871
Query 813 TTCACTCCATGAGTTCCAGAAACATTTGAAAGACCAGAGCAATGAAGCAATCGAGCAAGA 872
|||||||| ||| ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 872 TTCACTCCTTGAATTCCAGAAACACTTGAAAGATCAGAGCAACGAAGCAATTGAGCAAGA 931
Query 873 CCGAGCTGGACTTCTGAGACAGTTAGAAAAGATCAAAGAACAGCTTGTTCTGTCTTGCAA 932
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 932 CCGAGCTGGACTTCTGAGACAGTTAGAAAAGATCAAAGAACAGCTTGTTCAGTCTTGCAA 991
Query 933 TGTGGCGACTGACAAGTCTAAAGAACAGGTTTCTAGTTTTTCGTCCGCCTCGGGGTTGAA 992
|||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 992 TGTGGCAACTGACAAGTCTAAAGAACAGGCTCCTAGTTCTTCGTCCGCCTCGGGGTTGAA 1051
Query 993 CAAGGCGCCTCCAATGCAGTTTCACAGTACGGGAAATCACGCTGTTGGAGGTCCTTCTTA 1052
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1052 CAAGGCGCCTCCAATGCGGTTTCACAGTACAGGAAATCACGCTGTTGGAGGTCCTTCTTA 1111
Query 1053 TTACCATCAACATCCTGAACCGCAGTTTCCTTACAACAACAAC-A-A-CAATGAAGTCCC 1109
|||||||| | | || | ||||||||||||||||||||| | | |||||||| |||
Sbjct 1112 TTACCATC-A-A-CC---A---CAGTTTCCTTACAACAACAACAACATCAATGAAGCCCC 1162
Query 1110 TATGCACCATAGTCTGATGCATCCCTCTTATGGAGACACTCATAGGTTCCCTATACACGG 1169
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1163 TATGCACCACAGTCTGATGCATCCCTCTTATGGAGACCCTCATAGGTTCCCGATACACGG 1222
Query 1170 AAGAGGTCCTCATCCCTACTTCTCGGGACAATATGTTGGTAATAATAACAACGGTCATGA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 AAGAGGTCCTCATCCCTACTTCTCGGGACAATATGTTGGTAATAATAACAACGGTCATGA 1282
Query 1230 CCTCTTTGACGCATACCCGCAGCAAAACGGGCATTTTCATCACTCATCTTGCTCTTGTTA 1289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TCTCTTTGACGCATACCCGCAGCAAAACGGGCATTTTCATCACTCATCTTGCTCTTGTTA 1342
Query 1290 CCAGTGTTATGATAATAAATACTGGCGAGGTCCAGCACCGGTGATCCCTGATGCACCCTA 1349
||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1343 CCACTGTTATGATAATAAATACTGGCGAGGTTCAGCACCGGTGGTCCCTGATGCACCCTA 1402
Query 1350 TAACGCCGGTTTTTATCCTCATGAGAGCGTTATGGGTTTTGCTCCACCGCATAATCCAAG 1409
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1403 TAATGCTGGTTTTTATCCTCATGAGAGCGTTATGGGTTTTGCTCCACCGCATAATCCTAG 1462
Query 1410 AACTTATGGTTCTCGTGGTCTACAGCCTCATGGCAGATGGCCTAGTAACTTCAGTGATGC 1469
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1463 AACTTATGGTTCTCGTGGTCTACAGCCTCATGGAAGATGGCCTAGTAACTTCAGTGATGC 1522
Query 1470 TCAAATGGACT-CTCTTTCGCGGATACGTCCTCCTAAAGTTGTATTATCAGGTGGATCTC 1528
||||||||| | ||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1523 TCAAATGGA-TGCTCTTTCTCGGATTCGTCCTCCTAAAGTTGTATTATCAGGCGGATCTC 1581
Query 1529 GTCATATCCGCCCTTTGGCAGGTGGTGCTCCGTTTATAACCTGTCAAAACTGTTTTGAGC 1588
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1582 GTCATATCCGCCCTTTGGCAGGTGGTGCACCGTTTATAACCTGTCAAAACTGCTTTGAGC 1641
Query 1589 TTCTACAATTGCCAAAGAAACCAGAGGCTGGTACaaaaaaaCAGCAGAAAGTGCGATGTG 1648
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1642 TTCTACAATTGCCAAAGAAACCAGAGGCTGGTACAAAGAAACAACAGAAAGTGCGGTGTG 1701
Query 1649 GAGCATGCTCTTGTTTGATAGATTTATCTGTTGTTAATAACAAATTCGTTCTCTCGACAA 1708
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 GAGCATGTTCCTGTTTGATAGATTTATCTGTTGTTAATAACAAATTCGTTCTCTCGACAA 1761
Query 1709 ACACAGCTTCAACGAGACAAGGAGAAGCCCGTGTAGCTGCTGATTACACTTCTGATGACT 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 ACACAGCTTCAACGAGACAAGGAGAAGCCCGTGTAGCTGCTGATTACACTTCTGATGACT 1821
Query 1769 ATGATCTTCTTGGTTATGTGTTTCATTCGTTGGATGATGAACCAAGAGATCTTCCAGGAT 1828
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1822 ATGATCTTCTTGGTTATGTATTTCACTCGTTGGATGATGAACCAAGAGATCTTCCGGGAT 1881
Query 1829 TGATTTCAGACAAGTCTCAAGATATGCAGCACGTTCATTCTCATTCCGCTAGCCTTTCCG 1888
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1882 TGATTTCAGACAAGTCTCAAGATATGCAACACGTTCATTCTCATTCCGCCAGCCTTTCCG 1941
Query 1889 AGG-ACGAGCTAAGCTCAGACAGTCTAACAGCTAAGCCACTAGCTCAAGCTCAAGATAAC 1947
||| | ||||||||||||||||||||||| ||||||||||||||| ||||||| || |||
Sbjct 1942 AGGGA-GAGCTAAGCTCAGACAGTCTAACCGCTAAGCCACTAGCTGAAGCTCACGAAAAC 2000
Query 1948 TTTGTTGATTACTCTTCGATCAATCATGACCGGTCTGGAGCAGGCAGCCGTAGCTCTCGT 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 TTTGTTGATTACTCTTCGATCAATCATGACCGGTCTGGAGCAGGCAGCCGTAGCTCTCGT 2060
Query 2008 TCGGAACACGACAAGGTCACACTGAGCAAGACGACAGCTATGAGACAGAACTCCATGAAA 2067
|| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 2061 TCAGAACACGACAAGGTCACACTGAGCAAGGCAACAGCCATGAGACAGAACTCCATGAAA 2120
Query 2068 GAGGTTTCACTTGCAAGTGAGATGGAAGTTAACTTCAACGACTACTCTCATCGTAACAGT 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2121 GAGGTTTCACTTGCAAGTGAGATGGAAGTTAACTTCAACGACTACTCTCATCGTAACAGT 2180
Query 2128 GGAGTATCTAAAGATCAGCAGCAAAGAGCCAAGAAGAGCGGATTTGCAAGCATTGTGAAG 2187
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 2181 GGAGTATCTAAAGATCAGCAGCAAAGAGCTAAGAAGAGCGGATTCGCGAGCATTGTGAAG 2240
Query 2188 AAAAGCTTCAAGGATCTGACAAAATCTATTCAGAATGATGAAGGGAATAAAAGCAATGTT 2247
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2241 AAAAGCTTCAAAGATCTGACAAAATCTATTCAGAATGATGAAGGGAACAAAAGCAATGTT 2300
Query 2248 TCGATAAATGGACATCCTTTAACAGAACGTCTGCTGAGAAAAGCTGAGAAGCAAGCCGGA 2307
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2301 TCGATAAATGGACATCCTTTAACCGAACGTCTGCTGAGAAAAGCAGAGAAGCAAGCCGGA 2360
Query 2308 GTCATTCAGCCAGGAAACTACTGGTATGATTACAGAGCTGGATTCTGGGGAGTAATGGGA 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 GTCATTCAGCCAGGAAACTACTGGTATGATTACAGAGCTGGATTCTGGGGAGTAATGGGA 2420
Query 2368 GGTCCAGGTCTTGGAATATTACCGCCATTCATAGAAGAGCTTAACTACCCAATGCCAGAG 2427
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2421 GGTCCAGGTCTTGGAATATTACCGCCATTCATAGAAGAGCTTAATTACCCAATGCCAGAG 2480
Query 2428 AACTGCTCAGGTGGAACCACGGGAGTGTTTGTCAACGGGAGAGAGCTTCACCGGAAAGAT 2487
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2481 AACTGCTCAGGTGGAACAACGGGAGTGTTTGTGAACGGAAGAGAGCTTCACCGGAAAGAT 2540
Query 2488 TTGGACTTGCTTGCGGGTAGAGGACTTCCTCCAGACAGAGATAGATCATACATTGTTGAC 2547
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2541 TTGGACTTGCTTGCGGGTAGAGGACTTCCTCCGGACAGAGATAGATCCTACATTGTTGAC 2600
Query 2548 ATCACGGGTAGAGTCATAGATGAAGACACCGGTGAAGAGCTCGATTGCCTCGGGAAACTA 2607
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 ATAACGGGTAGAGTCATAGATGAAGACACCGGTGAAGAGCTCGATTGCCTCGGGAAACTA 2660
Query 2608 GCCCCAAC 2615
||||||||
Sbjct 2661 GCCCCAAC 2668
Score = 152 bits (82), Expect = 2e-35
Identities = 111/124 (90%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 1 AAAGGAGCGAAATTTGCAGAAGAAACAAAGCATAACCCCCCAGAGAAAGAT------TTT 54
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3 AAAGGAGCGAAATTTGCAGAAGAAACAAAGCATAACCCCCCAGAGAAAGAGAGAGAGTTT 62
Query 55 CTCCCAACAAGACCAAACTTCGAACTCCACGAGAACTACCATTAACCAAAACTAGAAATA 114
|||||||||||| |||||||||||||| ||||||||||| |||| ||||||| ||||||
Sbjct 63 CTCCCAACAAGATCAAACTTCGAACTCTACGAGAACTACTATTATCCAAAACGCGAAATA 122
Query 115 GAGA 118
||||
Sbjct 123 GAGA 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129832048484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5