BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486660
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61710.1 | Symbols: ATATG6, ATG6, BECLIN1, AtBECLIN1 | AUTOP... 2534 0.0
> AT3G61710.1 | Symbols: ATATG6, ATG6, BECLIN1, AtBECLIN1 | AUTOPHAGY
6 | chr3:22839315-22842432 REVERSE LENGTH=1895
Length=1895
Score = 2534 bits (1372), Expect = 0.0
Identities = 1578/1674 (94%), Gaps = 28/1674 (2%)
Strand=Plus/Plus
Query 112 GGAGAGCGATGAGGAAAGAGGAGATTCCAGATAAAAGTCGG---AT-----T-GATCCGA 162
||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 172 GGAGAGCGATGAGGAAAGAGGAGATTCCAGATAAAAGTCGGACTATCCCGATCGATCCGA 231
Query 163 ATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACGCCCTTACCATCGTCGGCGTCGATT 222
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 232 ATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATT 291
Query 223 CCTACGCCGGCAAGTTCTTCAACGATTCCCCTCCTTCCGGTACGCAGGGCTCCTCCATCC 282
|||||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||
Sbjct 292 CCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGCTACGCAGGGCTCATCTATCC 351
Query 283 ATGGAGCTAGCAGTGTTCTTGGTTCAACACGCATGGACAACTCTTTCGTTGTTTTACCTC 342
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 352 ATGGAGCTAACAGTGTTCTTGGTTCAACACGCATGGACAACTCTTTTGTTGTTTTACCTC 411
Query 343 GACATAAG---CCTC-A--TCAGGGCATTCCTCCACGTCCTCGTGGGGCCTCGTCTGCTC 396
|||||||| |||| | |||||||||||||||||||||||| ||||| || || |||
Sbjct 412 GACATAAGCCTCCTCAATCTCAGGGCATTCCTCCACGTCCTCGCGGGGCGTCCTCACCTC 471
Query 397 AGCCTGATGCAACTCATTCTGGAAAGGCAATGGAAGAATCGTTTGTAGTTGTGTACAAGT 456
|||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct 472 AGCCTGATGCTACTCAATCTGGAAAGGCGATGGAGGAATCGTTTGTAGTTGTCTATAAGT 531
Query 457 CTGAGCCTGCTTCTGATTCTGGCGCTTCTCACAATCTGTCTCTTGAAGTGGGCCAAAACG 516
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 532 CTGAGCCTGTTTCTGATTCTGGTGGTTCTCACAATCTGTCTCTTGAAGTGGGCCAAAACG 591
Query 517 GTCCCTTACATTCAAATACTTCTGGCTTTAATGCGACTATCAATGTCTTAACACGTGCTT 576
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 GTCCCTTACATTCAAATACTTCTGGCTTTAATGCGACTATCAATGTCTTAACTCGTGCTT 651
Query 577 TCGATATTGCCAGAACTCAGACACAGGTTGAACAGCCATTGTGCTTAGAATGCATGAGGG 636
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTGATATTGCTAGAACTCAGACACAGGTTGAACAGCCATTGTGCTTAGAATGCATGAGGG 711
Query 637 TATTGTCTGACAAACTTGAAAAAGAAGTCGAGGATGTGACGAGGGACGTGGAAGCATACG 696
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TATTGTCTGATAAACTTGAAAAAGAAGTCGAGGATGTGACGAGGGACGTGGAAGCATACG 771
Query 697 AAGCATGCGTTCAGCGGTTAGAAGGGGAGACACAAGATGTTCTTAGTGAAGCTGATTTTT 756
|||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 772 AAGCATGCGTTCAGAGGTTAGAAGGAGAGACGCAAGATGTTCTTAGTGAAGCTGATTTTC 831
Query 757 TGAAGGaaaaaaagaagattgaggaagaagaaagaaaacttgttgcagctatagaagaaa 816
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCAAGGAAAAGAAGAAGATTGAGGAAGAAGAAAGAAAACTTGTTGCAGCTATAGAAGAAA 891
Query 817 cagagaaacaaaaTGCTGAAGTAAACCATCAACTGAAAGAGCTAG-AGTCAAAGGGAAAT 875
||||||||||||||||||||||||||||||||||||| ||||||| | || |||||||||
Sbjct 892 CAGAGAAACAAAATGCTGAAGTAAACCATCAACTGAAGGAGCTAGAATTC-AAGGGAAAT 950
Query 876 CGCTTTAACGAACTTGAAGATCGGTATTGGCAAGAGTTCAATAATTTTCAATTTCAACTA 935
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 951 CGTTTTAACGAACTTGAAGATCGGTATTGGCAAGAGTTCAATAATTTTCAGTTTCAATTA 1010
Query 936 ATAGCACATCAGGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACAT 995
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ATTGCCCATCAGGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACAT 1070
Query 996 TTAGAGTTATTAAATAAGACTAATGTACTTACTGATGCCTTCCCCATACGGTATGATGGA 1055
|||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 1071 TTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGAATGATGGG 1130
Query 1056 GATTTTGGTACAATTAACAATTTTCGACTTGGAAGACTCCCTGCCATAAAGGTTGAGTGG 1115
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1131 GAATTTGGTACAATTAACAATTTTCGACTTGGAAGACTCCCTGCCATAAAAGTTGAGTGG 1190
Query 1116 GATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTAT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTAT 1250
Query 1176 TTCCGGCCAAAGTTTCAATGTCGAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATT 1235
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1251 TTCCGGCCAAAGTTTCAATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATT 1310
Query 1236 GTAGACAGCAACAACGAAACTTATGAGCTGTTTGGTCCTGTAAACTTGTTTTGGAGTACT 1295
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1311 GTAGACAGCAACAACGAAACTTATGAGCTGTTTGGTCCTGTTAACTTGTTTTGGAGCACT 1370
Query 1296 CGGTACGATAAAGCCATGACACTGTATTTGATGTGTCTTAAAGACTTTGCTGATTTCGCA 1355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1371 CGGTACGATAAAGCCATGACACTGTATTTGATGTGTCTTAAAGACTTTGCTGATTTTGCA 1430
Query 1356 AATTCAAAGGACCAAGAGAACAATATTCCACCAGAGAAATGCCTCAAACTTCCATACAAG 1415
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1431 AATTCAAAGGACCAAGAGAACAATATTCCACCAGATAATTGCCTCAACCTTCCATACAAG 1490
Query 1416 ATCGAAAAGGACAAAGTGGAGGGATTTTCAATAACACAGAGCTTCAACAAGCAAGAGAGT 1475
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1491 ATCGAAAAGGACAAAGTATTGGGGTATTCAATAACACAGAGCTTCAACAAGCAAGAGAGT 1550
Query 1476 TGGACCAAAGCACTAAAGTATACTCTCTGCAACCTCAAATGGGCACTCTACTGGTTCGTT 1535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1551 TGGACCAAAGCACTAAAGTATACTCTCTGCAACCTCAAATGGGCTCTCTACTGGTTCGTT 1610
Query 1536 GGAAACACTAATTTCCAACCTCTCTCTGCGACGGTCTCTCTGCCTTCTGATATATCAGCT 1595
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1611 GGAAACACTAATTTCCAACCTCTCTCTGCGACGGTCTCTCTGCCTTCTAATATATCAGCG 1670
Query 1596 GCTGGTTCCTTGTACGCCAAGCGAGGTCCTGATTCTAGTAAGCCCTCAGCTGGTAAAAAA 1655
|||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 1671 GCTGGTTCCTTGTACGCCAAGCGAGGTCCTGACTCTAGTAAGCCTTCA--TG-TAAAAAA 1727
Query 1656 CCTTAGAAACTCATGATAGATTGACTGAAATCAGCGACTTTGTGAATAGTTTATAAGCAT 1715
||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 1728 ACTTAGAAACTCGTGATAGA----CTGAA-TCAACGACTTTGTGAATAGTTTATAAGCAT 1782
Query 1716 TTATGCCATAGCATC---GAATAATAAGAAACACAGATGCTTTTAAGttttttt 1766
||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1783 TTATGTCATAGCATCATCGAATAATAAGAAACATTGATGCTTTTAAGTTTTTTT 1836
Score = 176 bits (95), Expect = 6e-43
Identities = 107/113 (95%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 3 GAGAAATCTAAAATTAGGCGGTGAATGATTTAGATTAGTAAGAAGCATCACACACACAGA 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 27 GAGAAATCTAAAATTAGGCGGTGAATGATTTAGATTAGTAACAAGCATCACACACACAGA 86
Query 63 TTGATAAGTGTAGATAAATTCAAACCCAAACCCTAGATTGATTGCGTACGGAG 115
||| | ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 87 TTGTTTGGTGTAGACAAATTCAAACCCTAACCCTAGATTGATTGCGTACGGAG 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5