BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486680
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61790.1 | Symbols: | Protein with RING/U-box and TRAF-like... 2025 0.0
> AT3G61790.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr3:22871791-22873786 REVERSE LENGTH=1407
Length=1407
Score = 2025 bits (1096), Expect = 0.0
Identities = 1303/1393 (94%), Gaps = 53/1393 (4%)
Strand=Plus/Plus
Query 1 TCTCTCTAACACAGCCGCCTTTGTGACCGTCCGATTTTAAATCAGCGTTTCCGGTTCATT 60
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 TCTCTTTAACACAGCCGCCTTTGTGACCGTCCGATCTTAAATCAGCGTTTCCGGTTCATT 62
Query 61 TGACGGCAActctctctctctctctctct--AGAATTGATGAAGAAAAGCATCTATCttt 118
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 63 TGACGGCAACTATCTCTCTCTCTCTCTCTAGAGAATTGATGAAGAAGAGCATCTATCTTT 122
Query 119 tttgtttttGAAAATCAACAACACTTCACGAGGGTTGACCTGTTTCGGTGGTGTTTCTTC 178
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TTTGTTTTTGAAAATTAACAACACTTCACGAGGGTTGACCTGTTTCGGTGGTGTTTCTTC 182
Query 179 AATTCATCCCGAATTTTGATATTTCGTTTCGATCGAAGATCAATCAAAGTTTCCACCTTT 238
|| | | ||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 183 AA-T--T-CCGGATTTTGATCTTTCGTTTCGATCGAAGATCAATCAAAGTCTCCACCTTT 238
Query 239 CTTCAATGGATTTGGATAGCATGGACTGTACATCCACCGTGGATGTGACTGATGATGAAG 298
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 239 CTTCAATGGATTTGGATAGCATGGACTGTACATCAACCATGGATGTGACAGATGATGAAG 298
Query 299 AGATCCACCAAGATCGCCATTCCTACGCTTCTGTTTCCAAG---CATCATACTAAT---- 351
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 AGATCCACCAAGATCGCCATTCCTACGCTTCTGTTTCCAAGCATCATCATACTAATAACA 358
Query 352 -CA-CACCAACCTGAATGCTGCTGCTTCTGGGCTTCTCCCGACCACCACCAGTGTTCATG 409
|| ||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 ACACCACCAACGTTAATGCTGCTGCTTCTGGGCTTCTCCCTACCACCACCAGTGTTCATG 418
Query 410 AGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTCACA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTCACA 478
Query 470 ATGGTCATAC-TCTGTGTTCAACCTGTAAAAACAGGGTTCACAACCGCTGCCCAACTTGT 528
|||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 ATGGACATACGT-TGTGTTCAACCTGTAAAGCCAGGGTTCACAACCGCTGCCCAACTTGT 537
Query 529 AGACAAGAGCTCGGTGATATCCGTTGTTTGGCTCTGGAAAAAGTAGCCGAATCACTTGAA 588
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 AGACAAGAGCTCGGTGATATCCGTTGTTTGGCACTGGAAAAAGTAGCCGAATCACTTGAA 597
Query 589 CTACCGTGTAAACACATGTCACTTGGATGTCCTGAAATCTTCCCTTATTACAGTAAGCTC 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTACCTTGTAAACACATGTCACTTGGATGTCCTGAAATCTTCCCTTATTACAGTAAGCTC 657
Query 649 AAACATGAGACTGTATGTAACTTCAGGCCTTATAACTGTCCGTATGCTGGATCCGAGTGT 708
|||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 658 AAACATGAGACTGTATGTAACTTCAGACCTTATAGCTGCCCTTATGCTGGATCCGAGTGT 717
Query 709 TCTGTTACAGGCGATATACCTTTCTTAGTTGCTCATCTGAGGGATGATCATAAGGTGGAT 768
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCTGTTACGGGCGATATCCCTTTCTTAGTTGCTCATCTGAGGGATGATCATAAGGTGGAT 777
Query 769 ATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTCGAA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTCGAA 837
Query 829 AACGCCACATGGATGTTAACTGTCTTTCATTGCTTCGGTCAATACTTCTGTCTACACTTT 888
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 838 AACGCCACATGGATGTTAACTGTCTTTCACTGCTTCGGTCAATACTTCTGTCTTCACTTT 897
Query 889 GAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCCTTTCTGCGTTTCATGGGGGAC 948
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 898 GAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCGTTCCTGCGTTTCATGGGGGAC 957
Query 949 GAGACAGAAGCGCGGAACTACAATTACAGTTTAGAAGTGGGAGGTTATGGACGGAAGCTG 1008
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 GAGACAGAAGCTCGAAACTACAATTACAGTTTAGAAGTGGGAGGTTATGGTCGGAAGCTG 1017
Query 1009 ATATGGGAAGGAACACCGAGAAGCGTAAGAGACAGCCACAGGAAAGTTAGAGACAGTCAT 1068
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATATGGGAAGGAACACCAAGAAGCGTAAGAGACAGCCACAGGAAAGTTAGAGACAGTCAT 1077
Query 1069 GATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGGAGATAGGAAAGAG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGGAGATAGGAAAGAG 1137
Query 1129 CTGAAACTTCGAGTCACTGGAAGGATCTGGAAAGAGCAACAACAAAGTGGTGAAGGTGGA 1188
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 CTGAAACTTCGAGTCACTGGAAGGATATGGAAAGAGCAACAACAAAGTGGTGAAGGTGGA 1197
Query 1189 GGAGCTTGTATCCCAAACTTGTCTTG-----------------A--AAA-T--TTTTGAA 1226
|||||||||||||||||||||||||| | ||| | |||||||
Sbjct 1198 GGAGCTTGTATCCCAAACTTGTCTTGAAAATTAAAAAAAAAAAATCAAACTGATTTTGAA 1257
Query 1227 AACCTCGCCGA------CTTGTCTCTGTTAACCATGGTCATCTGTAATTAGGGTTTTCTC 1280
|||||| |||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1258 AACCTCACCGATTTGGCCTTGTCTCTG-TAACCATGGTTATCTGTAATTAGGGTTTTCTC 1316
Query 1281 TGACGATAAACTTGGG-TTGTTCTTATGTACCTCTCTCTGTCTTTCTCTTTCTCATGTCA 1339
|||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 1317 TGACGATAAACTTGGGGTTGTTCTTATGTATCTCTCTCTGTCTTTCTC------ATGTCA 1370
Query 1340 TGGAGGttttttt 1352
|||||||||||||
Sbjct 1371 TGGAGGTTTTTTT 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5