BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486683
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61820.1 | Symbols: | Eukaryotic aspartyl protease family p... 2435 0.0
> AT3G61820.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:22879804-22881630 REVERSE LENGTH=1827
Length=1827
Score = 2435 bits (1318), Expect = 0.0
Identities = 1516/1609 (94%), Gaps = 23/1609 (1%)
Strand=Plus/Plus
Query 1 GAGCTTCATTTTGCCTTTATATACTTTTGGGTAGATACA-A-ATAGACTATAGTCTCTAT 58
|||||||||||||||||| |||||||||| ||||||| | | | |||||||||||| |||
Sbjct 1 GAGCTTCATTTTGCCTTTGTATACTTTTGAGTAGATAGATAGACAGACTATAGTCTATAT 60
Query 59 AAGATCCATGTGACAATAGTTAAAATCCTCTCATATTTTCATTTCCAATGGAGCG-AAAT 117
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 61 AAGATCCATGTGACAATAGTTAAAAT-C-CTCATATTTTCATTTCCAATGGAGCGCAAA- 117
Query 118 GTCCTAAATACCCTCGTCTTCTCCGTCTTTGTCGTTCTCTTCTTCACCTCCATTTCCTCC 177
||| | |||||||||| |||||||||||||| |||||||||| | | || |||||
Sbjct 118 GTCTTGAATACCCTCGCCTTCTCCGTCTTTGCCGTTCTCTTC-T----T-CA---CCTCC 168
Query 178 TCTGCTTCCTCCCAATACCAAACTCTCGTCGTCAACACTCTTCCTTCCTCCGCAACCCTC 237
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 169 TCTGCTTCTTCCCAATACCAAACTCTTGTCGTCAACACTCTTCCTTCTTCCGCAACACTC 228
Query 238 TCGTGGCCCGAATCCGAATCTTTCTCTGATGAATCCGTATCCGAATCCACAACTTCACTC 297
|| |||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 229 TCATGGCCCGAGTCCGAATCTTTAACTGATGAATCTTTATCCGAGTCCACAACTTCACTC 288
Query 298 TCTGTTCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCCTCTCCGGTGGAC 357
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 289 TCTGTCCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCATCTCCGGCGGAC 348
Query 358 CTTTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCCATAACCAGCCTCGCC 417
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 349 CTCTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCTATTACCAGCCTCGCC 408
Query 418 GCCGTGTCAACCGGACGGAATGCCT-CCAAAAGAACTCCACGCT-CAGCAGGTGGATTTA 475
||||| ||||||||||| |||| || | |||||||||||||| | | || ||||||||||
Sbjct 409 GCCGTATCAACCGGACGAAATG-CTACGAAAAGAACTCCACG-TACCGCCGGTGGATTTA 466
Query 476 GCGGCGCCGTTATCTCCGGTCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTG 535
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GCGGCGCAGTTATCTCTGGCCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTG 526
Query 536 TTGGAACTCCGGCGACTAACGTTTACATGGTCCTCGACACAGGTAGCGACGTCGTTTGGC 595
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 527 TTGGAACTCCGGCGACTAACGTTTACATGGTGCTCGACACAGGAAGCGACGTCGTTTGGC 586
Query 596 TCCAATGCTCTCCTTGCAAAGCCTGTTACAACCA-ATCCGACGTCATTTTTGACCCCAAG 654
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||
Sbjct 587 TCCAATGCTCTCCTTGCAAAGCCTGTTACAACCAGA-CCGACGCCATTTTTGACCCGAAG 645
Query 655 AAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGAC 705
Query 715 TCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGAT 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGAC 765
Query 775 GGATCATTCACGGAAGGAGATTTCTCAACCGAAACGCTGACGTTTCACGGAGCGCGTGTT 834
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 766 GGATCATTCACCGAAGGAGATTTCTCAACTGAAACGCTGACGTTTCATGGAGCGCGTGTT 825
Query 835 GATCACGTGCCGTTAGGATGTGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGG 894
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 826 GATCACGTGCCGTTAGGATGCGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGG 885
Query 895 CTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTTCCGTCGCAGACGAAAAACCGTTATAAC 954
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 886 CTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTCCCGTCGCAGACGAAAAACCGTTATAAC 945
Query 955 GGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCGCCG 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 946 GGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCACCG 1005
Query 1015 TCAACTATCGTCTTCGGAAACGACGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTA 1074
||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1006 TCAACAATCGTGTTTGGAAACGCCGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTA 1065
Query 1075 ACGAATCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGT 1134
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 ACGAACCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGT 1125
Query 1135 TCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGT 1185
Query 1195 GTTATTATCGATTCCGGTACTTCGGTTACTCGGCTGACGCAATCTGCATACGTGGCGCTT 1254
|| ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1186 GTCATTATAGATTCCGGTACTTCGGTTACTCGGCTGACGCAACCTGCTTACGTAGCGCTT 1245
Query 1255 AGAGACGCGTTTCGACTTGGTGCGACGAAGCTGAAACGTGCTCCGTCGTATTCTTTGTTC 1314
|||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1246 AGAGACGCTTTTAGACTTGGTGCTACGAAGCTGAAACGTGCTCCATCGTATTCTTTGTTC 1305
Query 1315 GACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTGGTGTTCCAT 1374
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1306 GACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTTGTGTTTCAT 1365
Query 1375 TTCGGAGGTGGAGAGGTTTCACTTCCGGCGAGTAATTATCTGATTCCGGTGAACACTGAA 1434
|||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1366 TTCGGAGGCGGAGAGGTTTCGCTTCCGGCGAGTAATTATCTGATCCCGGTTAACACTGAA 1425
Query 1435 GGACGGTTCTGTTTTGCGTTCGCCGGAACTATGGGGAGTTTGTCGATAATTGGAAACATA 1494
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1426 GGACGGTTCTGTTTTGCGTTTGCCGGAACTATGGGGAGTTTGTCAATCATTGGAAACATA 1485
Query 1495 CAGCAACAAGGTTTCCGGGTCGCTTACGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCT 1554
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1486 CAGCAACAAGGTTTCCGGGTCGCTTATGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCT 1545
Query 1555 CGCGCGTGTTAGATTTTGAGTTTGAGTTGACTGATTTATTTCCACAAAG 1603
|||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1546 CGCGCGTGTTAGATTTTGAGCTTGAGTTGACTGATTTATT-CC-CAAAG 1592
Score = 104 bits (56), Expect = 3e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1598 ACAAAGCAAATTATCAAACATTGTTATCATCATCGACTTATCTTACTACTCATTAGTCAT 1657
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1612 ACAAAGCAAATTATCAAACATTGTTATCATCATCGACT-ATCATACTACTCATTAGTCAT 1670
Query 1658 GATTAATGA 1666
||| ||||
Sbjct 1671 CATTCATGA 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5