BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486685
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61840.1 | Symbols: | Protein of unknown function (DUF688) ... 835 0.0
> AT3G61840.1 | Symbols: | Protein of unknown function (DUF688)
| chr3:22892466-22893269 FORWARD LENGTH=804
Length=804
Score = 835 bits (452), Expect = 0.0
Identities = 569/622 (91%), Gaps = 21/622 (3%)
Strand=Plus/Plus
Query 1 TCTTCAATGACAATTACATATATTTAAATCCATTGTCTTCTTCTTCAAAGGAATCATAAT 60
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 TCTTCAATGACAATTACATATATTT-AATCCATTGTCTTCTTCTTCAAACGAATCATAAT 59
Query 61 ATGCAGAAACAAG-AA-AGATATGGTTACAACCCaaaaaaaGAACAAGAAAG---CAAGT 115
| ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 60 AAGCAGAAACAAGAAAGAGATATGGTTAAAACCCAAAAAAAGAACAAGAAAGATACAAGT 119
Query 116 TTTGACGAAGAAGACGATAACGAGGCGATGATAATCATCACATCGAAACTTCAACATGTG 175
|||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGAC---GCAGACGATAATGAGACGATGATAATCATCACATCGAAACTTCAACATGTA 176
Query 176 TTAGCAGCAAAATCGAGAAGGCTACAATACCTGTCATCACCGGTAACTAGTAACA-ACGT 234
||||| || ||||||||||||||||||||| | |||||||||||||| | ||| | ||||
Sbjct 177 TTAGCCGCGAAATCGAGAAGGCTACAATACTTATCATCACCGGTAACGACTAA-AGACGT 235
Query 235 GTCATTGTCACTCTTGTCGTCCCCTGATGATTCACTCTCTCGCGCTTCGATTCCTTTCTC 294
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTCATTGTCACTCATGTCGTCCCCTGATGATTCACTCTCTCGCGCTTCGATTCCTTTCTC 295
Query 295 ATGGGAAGTAGAACCTGGCAAGCCTAAACACCATGTTCGTCATCCTTCTTACTCCAAGTG 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATGGGAAGAAGAACCTGGCAAGCCTAAACACCATGTTCGTCATCCTTCTTACTCCAAGTG 355
Query 355 TCTTGATTTGCCACCGAGAATGCTCCTTCCTGACGAGTTTACCAAAATGCCTCTGACAGC 414
|||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||
Sbjct 356 TCTTGATTTGCCACCGAGGATGCTCTTTCCTGACGAATTTACCAAAATGCCTCGGACAGC 415
Query 415 TAATCATCGCTGTCGTCT-T-TCG--GGGTGGAAACGGTGGTTCCACTGGAAGAAAGAGA 470
|||||| | ||||| | | ||| ||||||||||||||||||| |||||||||||||
Sbjct 416 GAATCAT-G--GTCGT-TATCTCGCCGGGTGGAAACGGTGGTTCCGGTGGAAGAAAGAGA 471
Query 471 GAGGTGGTGATGATTATGTGGCCGGAAGTTGTAGTT-TCATTTATCCATCGGAAGATGAA 529
||| |||||||| |||||||||||||||| | |||| | |||||||||||||||||||||
Sbjct 472 GAGATGGTGATGCTTATGTGGCCGGAAGTGGAAGTTAT-ATTTATCCATCGGAAGATGAA 530
Query 530 GATGACATGAAGACCACAAGAACAAGAGGTCTCCATTGTTTCTCTTACGTCACTAGATGT 589
||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 531 GATGATACCAAGACCACAAGAACAAAAGGTCTCCATTGTTTCTCTTACGTCACTAGGTGT 590
Query 590 TATTTCTGGGTAAATTAACCTT 611
|| |||||||||||||||||||
Sbjct 591 TACTTCTGGGTAAATTAACCTT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5