BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486687
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61850.4 | Symbols: DAG1 | Dof-type zinc finger DNA-binding ... 1155 0.0
AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding ... 326 5e-88
> AT3G61850.4 | Symbols: DAG1 | Dof-type zinc finger DNA-binding
family protein | chr3:22895268-22897488 FORWARD LENGTH=1540
Length=1540
Score = 1155 bits (625), Expect = 0.0
Identities = 697/730 (95%), Gaps = 12/730 (2%)
Strand=Plus/Plus
Query 22 ttcttc-tcttcttcttcttcttcctcttggctgctttctttcATCATCCATAAAGTGAA 80
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 TTCTTCTTCTTCTTCTTCTTCTTCCTCTTGGCTGCTTTCTTTCATCATCCATAAAGTGAA 92
Query 81 AGCTAACGCAT--AGAGAGCTATATCGTCCCCaaaaaagcaaaagtccaaaaaaaaaaaC 138
||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||
Sbjct 93 AGCTAACGCATAGAGAGAGCCATATCGTCCCAAAAAAAGCAAAAGTCC--AAAAAAAAAC 150
Query 139 TATCTCCAAAACATtctctctttgctctttactctttagtttctctctctctctctgcct 198
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 151 -AACTCCAAAACATTCTCTCTTAGCTCTTTACTCTTTAGTTTCTCTCTCTCTCTCTGCCT 209
Query 199 ttctctttGTTGAAGTTCATGGATGCTACGAAGTGGACTCAGGGGTTTCAAGAAATGATA 258
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 210 TTCTCTTTGTTGAAGTTCATGGATGCTACGAAGTGGACTCAGGGTTTTCAAGAAATGATA 269
Query 259 AACGTAAAACCAATGGAGCAAATGATTTCTAGCACTAACAATAATACATCGCAACAACAA 318
|||||||| |||||||||||||||||||||||||| ||||| || ||| |||||||||||
Sbjct 270 AACGTAAAGCCAATGGAGCAAATGATTTCTAGCACCAACAACAACACACCGCAACAACAA 329
Query 319 CCAACATTCATCGCCACCAACGCAAGGCCAAGCGCCACCGCATCCAATGGTGGCTCCGGC 378
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 330 CCAACATTCATCGCCACCAACACAAGGCCAAACGCCACCGCATCCAATGGTGGCTCCGGA 389
Query 379 GGAAATAACAACAACACGGCTACCACGATGGAAACTAGAAAGGCGAGGCCACTAGAGAAA 438
||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 390 GGAAATACCAACAACACGGCT---ACGATGGAAACTAGAAAGGCGAGGCCACAAGAGAAA 446
Query 439 GTAAACTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGT 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGT 506
Query 499 CTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCT 566
Query 559 CTTCGAAACGTCCCTGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTA 618
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTA 626
Query 619 GCTTCACCTTCTAATCCCAAGCTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAA 678
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 627 GCTTCACCTTCTAATCCCAAACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAA 686
Query 679 ATCCCTAATAAGTCAAA-A--GATCTCAACTTGTTGTCTTTCCCGGTCATGCAAGATCAT 735
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 687 ATCCCTAATAAGTCAAATAAAGATCTCAACTTGCTATCTTTCCCGGTCATGCAAGATCAT 746
Query 736 CATCATCATG 745
||||||||||
Sbjct 747 CATCATCATG 756
Score = 1138 bits (616), Expect = 0.0
Identities = 680/709 (96%), Gaps = 11/709 (2%)
Strand=Plus/Plus
Query 741 TCATGCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAAGAGGCATGAACACGTTCTT 800
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCA-GCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAAGAGGCATGAACACGTTCTT 895
Query 801 GCCTGGTCAAATGATGGATTCAAACTCAGTCCTTTACTCATCTTTAGGGTTTCCAGCAAT 860
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 896 GCCTGGTCAAATGATGGATTCAAACTCAGTCCTGTACTCATCTTTAGGGTTTCCAACAAT 955
Query 861 GCCTGATTACAAACAGAGTAATAATAACCTTTCATTCTCCGTTGATCATCATCAAGGGAT 920
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 956 GCCTGATTACAAACAGAGTAATAACAACCTTTCATTCTCCATTGATCATCATCAAGGGAT 1015
Query 921 TGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAACGG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1016 TGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAATGG 1075
Query 981 AGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAAAGAGCTTTCAAGCACAACCCAAGA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAAAGAGCTTTCAAGCACAACCCAAGA 1135
Query 1041 GAAGAGTCATGGTAATAATACATACTGGAGTGGGATGTTCAGTAATACAGGAGGATCTTC 1100
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1136 GAAGAGTCATGGTAATAATACATATTGGAATGGGATGTTCAGTAATACAGGAGGATCTTC 1195
Query 1101 GTGGTG-AAAAAGGTTAAAAAGAGCTCATGAACTTATTAtctttcttctctttttct-ct 1158
||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||| |
Sbjct 1196 ATGGTGAAAAAAGGTTAAAAAGAGCTCATGAAC-TATCAGCTTTCTTCTCTTTTTCTGTT 1254
Query 1159 tttttctcctattttagtagagtttttactttgatgatcttttgttttttctCACATGGG 1218
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTTTTCTCCTATTTTATTATAGTTTTTACTTTGATGATCTTTTGTTTTTTCTCACATGGG 1314
Query 1219 GAACTTTACTTAAAGTTGTCAGAACTTAGTTTACAGATTGTCTTTTTATTCCTTCTTTCT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAACTTTACTTAAAGTTGTCAGAACTTAGTTTACAGATTGTCTTTTTATTCCTTCTTTCT 1374
Query 1279 GGttttt-ttttttcctttttA-ATCAGTCTTTTCAAAATATATATTTCATAATTGGGTT 1336
|||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 1375 GGTTTTCCTTTTTTCCTTTTTTTATCAGTCTTTTTAAAATATGTATTTCATAATTGGGTT 1434
Query 1337 TCATGGTCATTCATATTTATTAGTATCAAA-TAGAGTCTATGTTCATGAGG-AGTGTTAA 1394
| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1435 TGAT---CATTCATATTTATTAGTATCAAAATAGAGTCTATGTTCATGAGGGAGTGTTAA 1491
Query 1395 GGGGTGTGAGGGTAGAAGAATAAGTGAATACGAGGGCTTCGTGTGTAAT 1443
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GGGGTGTGAGGGTAGAAGAATAAGTGAATACGAGGGCTTCGTGTGTAAT 1540
> AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding
family protein | chr2:19133040-19134905 FORWARD LENGTH=1236
Length=1236
Score = 326 bits (176), Expect = 5e-88
Identities = 480/616 (78%), Gaps = 63/616 (10%)
Strand=Plus/Plus
Query 180 tctctctctctctctgcctttctctttGT-TGAAGTTCATGGATGCTACGAAGTGGACTC 238
||| |||||||||||| |||||||||||| |||| ||||||| |||||||||||||| |
Sbjct 90 TCTTTCTCTCTCTCTGGCTTTCTCTTTGTCGGAAG-TCATGGACGCTACGAAGTGGACAC 148
Query 239 AGGGGTTTCAAGAAATGATAAACGTAAAACCAATGGAGCA-A--ATGATTTCTAGCACTA 295
|||| |||||||||||||| ||||| |||||||||||||| | |||||| ||| | ||
Sbjct 149 AGGGTTTTCAAGAAATGATGAACGTTAAACCAATGGAGCAGATCATGATTCCTA--A-TA 205
Query 296 ACAATAATACATCGCAA-C-AACAACCAACATTC-ATCGCCA--CC-AACGCAAGGC-CA 348
|||| | |||| ||| | ||| ||| |||| | || || | || ||| | | | ||
Sbjct 206 ACAA-CACACAT--CAACCAAAC-ACC-ACATCCAAT-GCAAGGCCAAACACCATTCTCA 259
Query 349 -AGCGCCACCGCATC-CAA----TGGTG-----G-CTCCGGCGGAAATAACAACAA-CAC 395
| | || || || ||| ||| | | |||||||| || |||||||| ||
Sbjct 260 CATC-TAACGGCGTCTCAACTGCTGGAGCAACCGTCTCCGGCGTAAGCAACAACAATAAC 318
Query 396 GGCTACCACGATGGAAAC-TAGA--AAGGCGAGGCCACTAGAGAAAGTAAACTGTCCAAG 452
||| || | | | ||| || || || |||| ||||||| |||| ||||||||
Sbjct 319 -AATACGGCGGTTGTGGCGGAGAGGAAAGCAAGACCACAAGAGAAACTAAATTGTCCAAG 377
Query 453 ATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGTCTCACGCAACCAAG 512
|||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 378 ATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCAAG 437
Query 513 ATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCTCTTCGAAACGTCCC 572
|||||||||||||||||||||||||||||||||||||||||| |||||| | || || ||
Sbjct 438 ATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCC 497
Query 573 TGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTT-T--AGCTT-CA-CCT 627
||| ||||| ||||||||||||||||||||||| ||| || ||| | | | || |||
Sbjct 498 TGTGGGAGGAAGCTCAAGAAAGAACAAGAGATCATCTTCATCTTCTTCATCAAACATCCT 557
Query 628 TCT-A-A-TCCCAAG--C--TTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAAT 680
|| | | | ||| | |||||||||||||||| || || || ||||||| ||||||
Sbjct 558 TCAGACAATACCATCTTCACTTCCAGATCTAAACCCGCCAATACTCTTCTCAAACCAAAT 617
Query 681 CCCTAATAA---G------TCA--A-AAGATCTCAACTTGTTGTCTTTCCCGGTCATGCA 728
|| |||||| | ||| | ||||||||||||||||||||||||| ||||||||
Sbjct 618 CCATAATAAATCGAAAGGGTCATCACAAGATCTCAACTTGTTGTCTTTCCCAGTCATGCA 677
Query 729 AGATCATCATCATCAT 744
|||||| |||||||||
Sbjct 678 AGATCAACATCATCAT 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5