BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486690
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bind... 1376 0.0
> AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein | chr3:22900068-22902395
REVERSE LENGTH=1183
Length=1183
Score = 1376 bits (745), Expect = 0.0
Identities = 840/887 (95%), Gaps = 2/887 (0%)
Strand=Plus/Plus
Query 29 GTCGTCGTCGTCCTCTAGGGTTTGTTTATCGTTTCTTCTCCGATCGTTTAAGAGGACTTG 88
|||||||||||| |||||||||||||| |||||||||||||||| | || |||||| |||
Sbjct 72 GTCGTCGTCGTCGTCTAGGGTTTGTTTTTCGTTTCTTCTCCGATTG-TTCAGAGGAATTG 130
Query 89 CGGATTAAGATAAAGATGAGGCCAGTGTTCGTCGGCAATTTCGAGTACGAAACTCGCCAG 148
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 131 CGAATTAAGATAAAGATGAGGCCAGTGTTCGTCGGCAATTTCGAGTATGAAACTCGCCAG 190
Query 149 TCGGATTTGGAACGATTGTTCGACAAGTATGGGAGAGTCGAGCGAGTGGACATGAAATCT 208
|||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 191 TCGGATCTGGAACGGTTGTTCGACAAGTATGGGAGAGTCGACCGAGTGGACATGAAATCT 250
Query 209 GGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGATGCGATTCGCAAGCTT 268
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 251 GGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGACGCTATTCGCAAACTC 310
Query 269 GACAATTTCCCTTTTGGATATGAGAAACGCAGATTATCAGTTGAATGGGCAAAGGGTGAA 328
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 311 GACAATTTTCCTTTTGGATATGAGAAACGCAGGTTATCAGTTGAATGGGCAAAGGGTGAA 370
Query 329 CGTGGCAGGCCTCGTGGTGATGCGAAAGCCACTTCAAATCTGAAGCCTACAAAGACACTA 388
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 371 CGTGGCAGGCCTCGTGGTGACGCGAAAGCCCCTTCAAATCTGAAGCCTACAAAGACACTG 430
Query 389 TTTGTCATTAACTTTGACCCCATTACAACAAAAGAGCACGACATTGAAAAGCACTTTGAG 448
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 431 TTTGTCATTAACTTTGACCCCATTAGAACAAAAGAGCACGACATTGAAAAACACTTTGAG 490
Query 449 CCCTACGGTAAGGTCACCAATGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAA 508
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 491 CCCTATGGTAAGGTCACCAACGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAA 550
Query 509 ACACAAGAAGATGCCACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGG 568
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 ACACAAGAGGATGCTACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGG 610
Query 569 GTTGTTTCTGTGGAGTATGCCTTGAAGGATGACGATGAAAGAGATGATCGATATGGTGGT 628
|||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 611 GTTGTTTCCGTGGAGTATGCGTTGAAAGATGACGATGAAAGAGATGATCGAAATGGTGGT 670
Query 629 CGTAGCCCGAGAAGATCTCTTAGTCCTGTGTACCGTAGGCGTCCAAGTCCAGATTATGGT 688
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 671 CGTAGCCCGAGAAGGTCTCTTAGTCCTGTGTATCGTAGGCGTCCAAGTCCAGATTATGGC 730
Query 689 AGGCGTCCAAGTCCAGATTATGGTAGGCGTCCAAGTCCAGATAATGGTCGTGCACGAAGC 748
||||||||||| || | | | ||||||||||||||||||||| |||||||||| ||||||
Sbjct 731 AGGCGTCCAAGCCCTGGTCAGGGTAGGCGTCCAAGTCCAGATTATGGTCGTGCTCGAAGC 790
Query 749 CCAGAATACGACAGATACAAAGGTCCAACAGCTTATGAAAGACGCAGGAGTCCAGATTAT 808
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 791 CCAGAATACGACAGATACAAAGGTCCAGCAGCTTATGAAAGACGGAGGAGTCCAGATTAT 850
Query 809 GGACGAAGGAGTTCTGATTATGGTAGACCAAGGAGTCCTGGTTATGACCGATACAGAAGT 868
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 851 GGACGAAGGAGTTCTGATTATGGTAGACAAAGGAGCCCTGGTTATGACCGATACAGAAGT 910
Query 869 CGTTCTCCAGTCCCAAGAGGAAGACCTTGAAACAATGCAGAACACAG 915
|||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 911 CGTTCTCCAGTCCCAAGAGGAAGACCTTGAT-CAATGCAGAAAACAG 956
Score = 219 bits (118), Expect = 6e-56
Identities = 166/187 (89%), Gaps = 11/187 (6%)
Strand=Plus/Plus
Query 920 TATGTTGTGTTTTGAGTTAGAAGATGCTTTTTGATGTTTTGAAAGCCTTTGTTAACTTTG 979
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 997 TATGTTGTGTTTTGAGTTAGAAGATGCTTTTTGATGTTTTGAAATCCTT-GTTAACTTTG 1055
Query 980 GGATCTTAGACTTTTATCTCAAAATTAGTAGAAACCTCATCATGGCGCTTTTTTGTTACG 1039
||||||||||||||||||| ||||| ||||||||| |||| |||||||||| || |||
Sbjct 1056 GGATCTTAGACTTTTATCTTAAAATCAGTAGAAACTTCATAATGGCGCTTT---GTCACG 1112
Query 1040 ATATGTTATTATTACTTGGTTCATGTACCCTTTTGATTCGTCAT-AATTATTCTAAATCC 1098
|| ||||| |||||||||| ||| ||||| ||||||||| |||||||||||||||
Sbjct 1113 ATCTGTTA------CTTGGTTCATATACTCTTTTCATTCGTCATTAATTATTCTAAATCC 1166
Query 1099 CATATAA 1105
|||||||
Sbjct 1167 CATATAA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5