BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486698
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 837 0.0
> AT3G61930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
EXPRESSED IN: 11 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; Has 11 Blast hits to 11 proteins in 5 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:22935510-22936181 FORWARD LENGTH=672
Length=672
Score = 837 bits (453), Expect = 0.0
Identities = 616/687 (90%), Gaps = 42/687 (6%)
Strand=Plus/Plus
Query 1 AACAATCTCTCATAGTCATATATAGAAACAAGTCATACACGTATCAA-T---T------A 50
||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 AACAATCTCTCATAGTCATATATAGAAACAAGTCATACACGTATCAATTAAATGCAAGCA 60
Query 51 -----AAAAACAAGAAAGATCAAGAAATGGGGAATTTTCTTAGGAGAAGCTGCGCTGTGC 105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGGAAAAACAAGAAAGATCAAGAAATGGGGAATTTTCTTAGGAGAAGCTGCGCTGTGC 120
Query 106 ACCCGGCTTCCGGCGAGGGAGGAAGAGGAAGACACGTGGAGGATCCACAGCAACAACGTC 165
|||||||||||||||| ||||||||||||||||||||||| || || | |||||||||||
Sbjct 121 ACCCGGCTTCCGGCGACGGAGGAAGAGGAAGACACGTGGACGAGCCGCCGCAACAACGTC 180
Query 166 GAAGGAGTGTACGGATTAAAGTGAGGATGAGAAGAGATCAATTGGAAGATCTTTTATATT 225
||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||| || |
Sbjct 181 CAAGTAGTGTGCGGATTAAAGTGAGGATGAGAAGAGATCAACTCGAAGAGCTTTTGTACT 240
Query 226 TGGCGCGTCGTGGTGATCAATCGGACGACGGTGGTAAGATTGGTTTCTTGATTCTTAAAG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGCGCGTCGTGGTGATCAATCGGACGACGGTGGTAAGATTGGTTTCTTGATTCTTAAAG 300
Query 286 AATGTATGGAAGGTCGCTTACCAGCGAGTGTTCTTGGCTCCGGTGGCGATGTTCGATCTC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATGTATGGAAGGTCGCTTACCAGCGAGTGTTCTTGGCTCCGGTGGCGATGTTCGATCTC 360
Query 346 AACGGTGTGGAAGTTACTTGGTGTCTCGAAGATTGGGTTCCATCACAGAGGAATAATT-A 404
||||| ||||||||||| |||||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 361 AACGGCGTGGAAGTTACATGGTGTATCGGAGATTGGGTTCCATCACCGAGGAATAATTCA 420
Query 405 --A-T-TA-ATACATGTG-CATTCAATACATATAGTTTAAAAGTTTAGATAGACGACACT 458
| | || ||| ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TTAATATATATATATGTGTCTTTCAATACATATAGTTTTAAAGTTTAGATAGACGACACT 480
Query 459 TTAATAACGTTTTCTAGATCAACAATTATATGTAAGGCTaaagaaagaaaaaaagaaaaa 518
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 481 TTAATAACGTTTTCTAGATCAACAATTATATGTAAGGCTAAAGAAACAAAAAAA-A---- 535
Query 519 aaaggagtttc---a-caaaaaatagaaaagaagaagaaataaaattaaagTAGTATATT 574
|||||||| | |||||||| |||||||| || | ||| || || ||||||| ||
Sbjct 536 ---GGAGTTTCGTTATCAAAAAATTGAAAAGAA-AA-ATATATAA--AA-GTAGTATGTT 587
Query 575 TGTGTCATGCATTTAATTAAAGATATAAAAATGTAAATCTCAATACTTTTTATTT-TCAA 633
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 588 TGTGTCACGCATTTAATTAAAGATATAAG--TGTAAATCTCAATACTTTTTATTCGTCAA 645
Query 634 CAAATATAAGAGTTTTGATGGCGTTTT 660
|||||||||||||||||||||||||||
Sbjct 646 CAAATATAAGAGTTTTGATGGCGTTTT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5