BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486699
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61940.1 | Symbols: MTPA1, ATMTPA1 | Cation efflux family pr... 2063 0.0
> AT3G61940.1 | Symbols: MTPA1, ATMTPA1 | Cation efflux family
protein | chr3:22937170-22938574 FORWARD LENGTH=1313
Length=1313
Score = 2063 bits (1117), Expect = 0.0
Identities = 1252/1317 (95%), Gaps = 9/1317 (1%)
Strand=Plus/Plus
Query 1 TTTGACTCTCTGTTATGGTATGAATATGTTGTCATATCAATTAATGTGAATTTTTTGGTT 60
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 2 TTTGACTCTCTGTTATGGTATGAGTATGTTGTCATATCATTTAATGTGAA-TTTTTGGTT 60
Query 61 TGCTCGCATCTTTGTGTAGTTGTGCGATGCATTTCTCTGTTTTTTCCACCTTTAGAAGA- 119
|||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| || |
Sbjct 61 TGCTCGCATCCTTGTGTAGTTGTGGGATGCATGTCTCTGTTTTTTCCACCTTTA-AAAAT 119
Query 120 CTCCTTCATGTCTTAAACTATAA-ACCTTACTCTTGAATTGAGTTTCTACTATCTTGTTT 178
|||||||| |||| ||||| ||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 120 CTCCTTCAAGTCTCAAACTCTAACACCTTACTCCTGAATTGAGTTTCTACTATCTTG-TT 178
Query 179 GTCAGATGGAGTCAAGAAGAAGTAAAGTCTGTGGAGAAACAGCTTGTGGGTTTTCAATAT 238
|| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 179 GTAAGATGGATTCAAGAAGAAGTAAAGTTTGTGGAGAAACAGCTTGTGGGTTTTCAACAT 238
Query 239 CGACAAGTGATGCTAAAG-AACGAGCTGCTTCGATGCGAAAGCTCTGTTTCGTTGTGGTG 297
| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 CTTCAAGTGATGCT-AAGAAACGAGCTGCTTCAATGCGAAAGCTCTGTTTCGTTGTGGTG 297
Query 298 TCGTGTCTTTTGTTCATGAGCATAGAAGTTGTTGGTGGCATCAAGGCTAATAGTTTGGCT 357
| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 298 TTATGTCTTTTGTTCATGAGCATAGAAGTTGTTTGTGGCATTAAGGCTAACAGTTTGGCT 357
Query 358 ATATTAGCAGATGCAGCTCATTTACTCACTGATGTTGGTGCTTTTGCTATCTCTATGCTC 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 ATATTAGCAGATGCAGCTCATTTGCTCACTGATGTTGGTGCTTTTGCTATCTCTATGCTC 417
Query 418 TCCTTGTGGGCTTCTTCTTGGGAAGCAAATCCGCGACAGAGTTATGGATTCTTCAGGATT 477
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 TCCTTGTGGGCTTCTTCTTGGGAAGCAAATCCGCGACAGAGTTATGGGTTCTTCAGGATA 477
Query 478 GAGATTTTGGGCGCTCTTGTCTCAATCCAGCTCATTTGGTTACTCACTGGGATTTTGGTC 537
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAGATTTTAGGCACTCTTGTCTCAATCCAGCTCATTTGGTTACTCACTGGGATTTTGGTC 537
Query 538 TATGAAGCCGTAACTAGACTCGTTCAAGAGACCAATGATGATGTTGATGGTTTCTTTATG 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TACGAAGCCGTAACTAGACTCGTTCAAGAGACCAATGATGATGTTGATGGTTTCTTTATG 597
Query 598 GTTCTTGTTGCTACTTTTGGTTTACTTGTAAACATCATAATGATTGTAGTGCTTGGACAT 657
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 598 GTTCTTGTTGCTGCTTTTGGTTTAGTTGTAAACATCATAATGATTGTTGTGCTTGGACAT 657
Query 658 GATCATGGACATGGGCATGGTCATGGTCATTGTCGTGGTCATAGTCATAGTCATGGGGAA 717
||||| ||||||||||||| ||||||||| ||| || |||| |||||||| ||||||||
Sbjct 658 GATCACGGACATGGGCATGATCATGGTCACAGTCATGATCATGGTCATAGTTATGGGGAA 717
Query 718 AAAGCTGAGCAATTGTTGGAGAAATCGAAGGAAATTAAG-AACATTAATGTGCAAGGGGC 776
| ||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 718 AGAGCTGAGCAGTTGTTGGAGAAATCCAAGGAAAT-AAGGAACATTAATGTGCAAGGGGC 776
Query 777 TTATCTTCATGTTCTTGGGGATTTAATCCAGAGCATTGGAGTAATGATTGGAGGGGGTAT 836
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 777 TTATCTTCATGTTCTTGGGGATTTAATTCAGAGCATTGGGGTAATGATTGGAGGGGGTAT 836
Query 837 GATTTGGTATAACCCTAAATGGAAAGTAATTGACTTGATATGCACGTTAGTCTTTTCAGT 896
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 GATTTGGTATAACCCTAAATGGAAAGTAATTGACTTGATATGCACGTTATTCTTTTCAGT 896
Query 897 TATTGTTTTAGGGACAACCATTAAGATGCTTCGAAGCATACTTGAAGTTCTAATGGAGAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TATTGTTTTAGGGACAACCATTAAGATGCTTCGAAGCATACTTGAAGTTCTAATGGAGAG 956
Query 957 CACACCAAGAGAGATTGACGCGAGGCAGCTCGAAAAGGGATTGATGGAAATTGAAGAAGT 1016
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 CACACCGAGAGAGATAGACGCGAGGCAGCTCGAAAAGGGATTGATGGAAATTGAGGAAGT 1016
Query 1017 TGTGGATGTTCATGAGCTGCACATATGGGCAATTACAGTTGGTAAAGCTCTGTTTTCTTG 1076
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1017 TGTGGATGTTCATGAGCTGCACATATGGGCAATTACAGTTGGAAAAGCTCTGTTTTCTTG 1076
Query 1077 TCATGTCAAGGTTAGACCAGAAGCTGATGATGAAATGGTGCTGAACAAAGTGATCGATTA 1136
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 TCATGTCAAGGTTAGACCAGAAGCTGGTGATGAAATGGTGCTGAACAAAGTGATCGATTA 1136
Query 1137 CATCTGGAGAGAGTATCGTATCAGTCATGTTACGATACAAATCGAGCGTTAAAACAACAA 1196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1137 CATCTGGAGAGAGTATCGTATCAGTCACGTTACGATACAAATCGAGCGTTAAAACAACAA 1196
Query 1197 AAGAGTTCATTTCTCTGGTTTTCTGTCATTTTCATGATCAAAGTTAAATCTTTTTTCGCT 1256
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGGGTTCATTTCTCTGGTTTTCTGTCATTTTCATGATCAAAGTTAAATCTTTTTTCGCT 1256
Query 1257 TTCTCGTGTGCTCTCATTACATTGCTGTGACATATGCCATTGTATTTCTTGTTTATG 1313
||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 1257 TTCTCGTATGCTCTCATTACCTTGTTGTGACATATGCCATTGTCTTTCTTGTTTATG 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5