BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486700
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61950.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1823 0.0
> AT3G61950.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:22939546-22941451 FORWARD
LENGTH=1311
Length=1311
Score = 1823 bits (987), Expect = 0.0
Identities = 1206/1307 (92%), Gaps = 33/1307 (3%)
Strand=Plus/Plus
Query 1 AGAATCAGAAGAGAGTACATGAGTTTCCTCTTCTGCCTCTTTGGTGATTCTTAGCATTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAATCAGAAGAGAGTACATGAGTTTCCTCTTCTGCCTCTTTGGTGATTCTTAGCATTTA 60
Query 61 TTATTACTCACTCATCCTGTGTTCATTACATTACATAACAAACAAGAGCTCTCAAATGAA 120
|||||||||||||||| | | |||||||||||||||| |||||||||||||||||||| |
Sbjct 61 TTATTACTCACTCATCTTCTTTTCATTACATTACATACCAAACAAGAGCTCTCAAATGGA 120
Query 121 AAGGTTTCAAGGACACATCAACCCCTGTTTTTTCGATCGAAAACCGGATGTGAGAAGCCT 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AAGGTTTCAAGGACACATCAACCCCTGTTTCTTCGATCGAAAACCGGATGTGAGAAGCCT 180
Query 181 AGAAGTTCAAGGATTTGCAGAGGCTCAAAGCTTTGCCTTCAAAGAAGAAGAGGAAGAAAG 240
|| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 181 CGAGGTTCAAGGATTTGCAGAGGCTCAAAGCTTTGCTTTCAAAGAAAAAGAGGAAGAAAG 240
Query 241 CTTACAAGATACAGTTCCATTTCTACAGATGCTGCAAAGTGAAGACCCCTCATCGTTCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTTACAAGATACAGTTCCATTTCTACAGATGCTGCAAAGTGAAGACCCCTCATCGTTTTT 300
Query 301 TTCAATCAAAGAACCAAACTTTCTAACACTATTATCTCTTCAAACCCTCAAAGAGCCTTG 360
|||||||||||| ||||||||||| || ||| | ||||||||||||||||| ||||||||
Sbjct 301 TTCAATCAAAGAGCCAAACTTTCTGACGCTACTGTCTCTTCAAACCCTCAAGGAGCCTTG 360
Query 361 GGAACTCGAAAGCTTTCCGGAATCTCATTCAC-CGAGGCAATC-CGA---GACTAACCGC 415
|||||||||||| | |||| ||||| |||| | || | | | | ||||
Sbjct 361 GGAACTCGAAAG--AT-----ATCT--TTCACTTGAGG-ATTCACAATTTCATTCACCGG 410
Query 416 TTCTATC--AGA--AACC-ATCCATGGAAGGAGCCAATCAAGCTTTGTCAAGCCAAGAAC 470
| | ||| ||| |||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 411 TCCAATCTGAGACCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAAGCCAAGAA- 469
Query 471 CTT-TCTTAAGCCAAGCAATCATGACACTCCCTTCTTCTACCTCATCACCACTCACTGCA 529
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 470 ATTCCCTTTAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCATCACCACTCAGTGCA 529
Query 530 AATTCAAGACGTAAGCGCAAAATCAACCACTTGCTGCCACAAGAAATGACTCGagaaaag 589
|||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 530 CATTCAAGACGAAAGCGCAAAATCAACCACTTGCTGCCTCAAGAAATGACTAGAGAAAAG 589
Query 590 agaaaaaggaggaaaacaaaaccaagtaaaaacattgaagagattgagaatcaaagaaTA 649
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 590 AGAAAGAGGAGGAAAACAAAACCAAGTAAAAACAATGAAGAGATTGAGAATCAAAGAATA 649
Query 650 AACCACATTGCTGTCGAACGAAATC-GAAGACGTCAAATGAATGAACATATCAACTCTCT 708
|||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 650 AACCACATTGCTGTTGAACGAAA-CAGAAGACGTCAAATGAACGAACATATCAACTCTCT 708
Query 709 CCGTGCCCTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCGTCCATAGTAGGAGG 768
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 709 CCGGGCCCTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGG 768
Query 769 AGCGATAAACTACGTGAAGGTTCTAGAGCAAATCATACAATCTCTTGAATCGCAAAAGAG 828
||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 769 AGCAATAAACTACGTGAAGGTCCTCGAGCAAATCATACAATCTCTCGAATCGCAAAAGAG 828
Query 829 AACGCAACAAGAAAG---CAGTGAGGTAGTAGAAAACGCAATTAATCATCTCTCAGGCAT 885
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 829 AACGCAACAACAAAGTAACAGTGAGGTAGTAGAAAACGCACTTAATCATCTCTCAGGCAT 888
Query 886 TTCGTCGAACGA-CTCGTGGACAACTCAAGAAGATCAAACTTGTATCCCCAAAATCGAAG 944
|||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 889 TTCGTCGAACGACCT-GTGGACAACTCTTGAAGATCAAACTTGTATCCCCAAAATCGAAG 947
Query 945 CTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTCAGAAGAAACAAGGACAAC 1004
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 CTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTGAGAAGAAACAAGGACAAC 1007
Query 1005 TTCTCAAAGGAATCATTTCACTCGAAAAGCTTAAACTCACTGTTCTTCATCTGAATATCA 1064
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1008 TTCTCAAAGGAATCATATCACTTGAAAAGCTTAAACTCACTGTTCTTCATCTCAATATCA 1067
Query 1065 CCACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAGGATGAGTGCG 1124
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1068 CTACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAAGATGAGTGCG 1127
Query 1125 AATTAGAATCAGCCGACGAGATTACGGCGGCGGTGCATCAGATTTTCGATATTCCGACGA 1184
| ||||| ||||||||||||||||||||||| || |||| |||||||||||||||||| |
Sbjct 1128 ACTTAGAGTCAGCCGACGAGATTACGGCGGCTGTTCATCGGATTTTCGATATTCCGACAA 1187
Query 1185 TTTGATTAAAACACATATAATTCCAAAAAATATTAACAGCTGACAAAATGGTATCttttt 1244
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1188 TTTGATTAAA-CACATATAATTCCAAAAA-TATTAACAGCTGACAAAATGGTATCTTTTT 1245
Query 1245 ttttt--CCTACGTGTACTAtttttttAAGAATTAAGAGAATAAAAA 1289
||||| ||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1246 TTTTTTTCCTACTTGTACCAATTTTTTAAGAATTAAGAGAATAAAAA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5