BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486704
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61970.1 | Symbols: NGA2 | AP2/B3-like transcriptional facto... 1988 0.0
AT2G46870.1 | Symbols: NGA1 | AP2/B3-like transcriptional facto... 278 1e-73
AT1G01030.1 | Symbols: NGA3 | AP2/B3-like transcriptional facto... 196 4e-49
> AT3G61970.1 | Symbols: NGA2 | AP2/B3-like transcriptional factor
family protein | chr3:22951463-22952851 FORWARD LENGTH=1389
Length=1389
Score = 1988 bits (1076), Expect = 0.0
Identities = 1285/1377 (93%), Gaps = 50/1377 (4%)
Strand=Plus/Plus
Query 16 tctctctctctcttctcctt-ctctcAGAGATTGATCCTAACTTGTTTTTCCTTTCTCGG 74
||||||| |||| | ||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 34 TCTCTCT-TCTCCT-TCCTTGTTCTTAGAGATTGATCCTAACTTGTTTTTCCTTTCTTGG 91
Query 75 AATTGAAGAGTTTCTTGCTCCATAAACAGTAGAGAGAGAAAGCTTCAAAGAGAGAATCGT 134
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 AATTGAAGAGCTTCTTGTTCCATAAACAGTAGAGAGAGAAAGCTTCAAAGAGAGAATCGT 151
Query 135 GCTAATCAGTGAAGTTAGGCAAAAACCCACTTGCCATTTTTGTATAATTAGGTCAATCTC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 GCTAATCAGTGAAGTTAGGCAAAAACCCACTTGCCATTTTTGTATAATTAGGTCAATCTC 211
Query 195 ATCCACCACCATACTCAATTCTCTTCCTTCTGAAATTAGGGTTTTT---ATCTCTTCCTC 251
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 212 ATCCACCACCATACTCAATTCTCTTCCTTCTGAAATTAGGGTTTTTTTTATCTCCTCCTC 271
Query 252 TCTCTTTCTTGTCTACCTaaaaaaaGATTGAA-GAATAACTCTCAAATCGTATGGTGAGG 310
||||||||||||||||| |||||| | || | |||| ||||||||||||||||||||||
Sbjct 272 TCTCTTTCTTGTCTACC-AAAAAAGGTTTTATCGAATTACTCTCAAATCGTATGGTGAGG 330
Query 311 AAGTCAAAATCTTGAAAGATCTGAGATTGCAAGAAGATGAATCAAGAAGATAAAGAGAAG 370
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 331 AAGTCAAAATCTTGAGAGATCTGAGATTGTAAGAAGATGAATCAAGAAGATAAAGAGAAG 390
Query 371 CCTATTGAAGAAGCTTCTTCATCAATGGAAAGAGAACACATGTTCGACAAAGTGGTAACA 430
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 391 CCTATTGAAGAAGCTTCTTCATCAATGGAGAGAGAACACATGTTCGACAAAGTAGTAACA 450
Query 431 CCAAGCGACGTAGGCAAACTAAACCGACTCGTGATACCAAAGCAACACGCAGAGAGATAC 490
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 451 CCAAGCGACGTTGGCAAACTAAACCGACTCGTGATCCCTAAGCAACACGCAGAGAGATAC 510
Query 491 TTCCCATTAGATAACTCCACAACAAACGACAACAACAAAGGTTTGCTTCTAAACTTCGAA 550
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 511 TTCCCATTAGATAACTCCACAACAAACGACAGCAACAAAGGTTTGCTTCTAAACTTCGAA 570
Query 551 GACCGAAGCGGAAACTCATGGAGGTTTCGTTACTCTTACTGGAACAGTAGTCAAAGCTAT 610
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 571 GATCGAAGTGGAAACTCATGGAGGTTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTAT 630
Query 611 GTCATGACTAAAGGTTGGAGCCGTTTCGTCAAAGACAAGAAGCTTGATGCTGGAGACATC 670
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 631 GTCATGACTAAAGGTTGGAGCCGTTTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATC 690
Query 671 GTTTCTTTTCAGAGAGACTCCGGTAATAAAGACAAGCTTTACATCGATTGGAGGAGACGA 730
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 691 GTTTCTTTTCAGAGAGATTCTTGTAATAAAGACAAGCTTTACATCGATTGGAGGAGACGA 750
Query 731 CCTAAGATTCCCGatcatcatcatcatcatcatcaGTTCGCCGGAGCTATGTTTCCTAGG 790
|||||||||||||||||||||||||| || || | ||||||||||||||| ||||||
Sbjct 751 CCTAAGATTCCCGATCATCATCATCAGCA--AT---T-CGCCGGAGCTATGTTCCCTAGG 804
Query 791 TTTTACACTTTCCCTCATCCTCAGATGCCGACAAATTACGAAAGTCACAACCTTTATCAT 850
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 805 TTTTACACTTTTCCTCATCCTCAGATGCCGACAAATTACGAAACTCACAACCTTTATCAT 864
Query 851 CGATTTCATCAACGAGATCTAGGAATTGGATACTATGTGAGGTCAATGGAGAGGAGTAAT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 865 CGATTTCATCAACGAGATCTAGGAATTGGATACTATGTGAGGTCAATGGAGAGGAGTCAT 924
Query 911 CCAACGGCTGTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGCACAAGTGGTTTCT 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 925 CCAACGGCTGTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGCACAAGTGGCTTCA 984
Query 971 ATGGCTTCGAGAGGAGAGAAGAGGTTAAGGCTGTTTGGTGTAGATATGGAGTGTGGAGGT 1030
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 985 ATGGCTTCGAGAGGAGAGAAGCGGTTAAGGCTGTTTGGTGTAGATATGGAGTG------- 1037
Query 1031 GGCGGAGGAGGAGGAGGGAGTGTTAATAGTACGGAGGAAGAGTCGTCGTCTTCCGGTGGT 1090
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1038 --CGGAGGAGGAGGAGGGAGTGTGAATAGTACGGAGGAAGAGTCGTCGTCTTCCGGTGGT 1095
Query 1091 AGTATGCCACGTGGCGGCGTTTCTATGGTTGGTGCTGGTTCTCTCCTCCAGTTGAGGTTA 1150
||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AGTATACCACGTGGCAGAGTTTCTATGGTTGGTGCTGGTTCTCTCCTCCAGTTGAGGTTA 1155
Query 1151 GTAAGCAGTGATGATGAGTCTTTAGTAGCAATGGAAGCTGCAAGTCTTGAGGATCATCAC 1210
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GTGAGCAGTGATGATGAGTCTTTAGTAGCAATGGAAGCTGCAAGTCTTGAGGATCATCAC 1215
Query 1211 TTCTTTACAAAGAAAGGAAAATCTTCTTTGTCTTTTGATTTGGATAG---ATGAT----- 1262
||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1216 TTCTTTACAAAGAAAGGAAAACCTTCTTTGTCTTTTGATTTGGATAGGTGATGATTATCA 1275
Query 1263 -GA--TTAA--A--AT--------GCatatatatgataatttatac-atatatctatata 1306
|| |||| | || |||||||||||||||||||||| |||||| ||||||
Sbjct 1276 TGAGATTAATCACTATTTAAAAATGCATATATATGATAATTTATACCATATAT-TATATA 1334
Query 1307 tatGACACAAAGTTGTCTTTCAAGATTTAATGATATTATCAAGAAATAACATGTTTT 1363
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 T--GACACAAAGATGTCTTTCAAGATTTAATGATATTATCAAGAAATAACATGTTTT 1389
> AT2G46870.1 | Symbols: NGA1 | AP2/B3-like transcriptional factor
family protein | chr2:19260918-19262404 FORWARD LENGTH=1487
Length=1487
Score = 278 bits (150), Expect = 1e-73
Identities = 335/418 (80%), Gaps = 38/418 (9%)
Strand=Plus/Plus
Query 401 AGAGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTAGGCAAACTAAACCGACTC 460
||||| ||||||||||||||||| || || ||||| || || || ||||||||||||||
Sbjct 486 AGAGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTT 545
Query 461 GTGATACCAAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCACAACAAACGAC 520
||||| |||||||||||||||||||||| |||||| |||||| | || | | |
Sbjct 546 GTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGAT---T---CATC-TTC-A- 596
Query 521 AACAACAAAGGTTTGCTTCTAAACTTCGAAGACCGAAGC-GG-AAACTCATGGAGGTTTC 578
||| | |||||||||||| ||||||||||||| | | | || ||| || |||||||| |
Sbjct 597 AACGAGAAAGGTTTGCTTTTAAACTTCGAAGATCTCA-CTGGCAAA-TCTTGGAGGTTCC 654
Query 579 GTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTCG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 655 GTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCG 714
Query 639 TCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGA-GACTCCGGTA-A 696
| |||||||| |||||||| || ||||| || || ||||| || ||| | || || | |
Sbjct 715 TTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTC-GG-AGA 772
Query 697 T--A--AAGACA-AGC--TTTAC--ATCGATTGGAGGAGACGACCTAAGATTCCC-Gatc 746
| | |||| | ||| ||| || |||||||||||| ||||||| | |||| || |
Sbjct 773 TTCAGGAAGAGATAGCCGTTTGTTTATTGATTGGAGGAGAAGACCTAA-AGTCCCTGACC 831
Query 747 atcatcatcatcatcatcaGTTCGCCGGAGCTATGTTTCCTAGGTTTTACA-CTTTCC 803
||| | |||| | || | ||||||||||||||| ||||||||||||| ||||||
Sbjct 832 ATC--C-TCAT--T--TC-GC-CGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTTCC 880
Score = 60.2 bits (32), Expect = 5e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 920 GTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGC 957
||||||||||||||||||||||||||||| |||||||
Sbjct 1041 GTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGC 1078
> AT1G01030.1 | Symbols: NGA3 | AP2/B3-like transcriptional factor
family protein | chr1:11649-13714 REVERSE LENGTH=1905
Length=1905
Score = 196 bits (106), Expect = 4e-49
Identities = 226/281 (80%), Gaps = 19/281 (7%)
Strand=Plus/Plus
Query 403 AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTAGGCAAACTAAACCGACTCGT 462
||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||
Sbjct 769 AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAGACTCGT 828
Query 463 GATACC-AAAGCAACACGCAGAGAGATACTTCCCAT-TAGATAACTCCACAA-CAAACGA 519
||| || ||| |||||||| ||||| || ||||| | |||| |||| ||| ||| |
Sbjct 829 GATCCCTAAA-CAACACGCTGAGAGGTATTTCCC-TCTAGA---CTCCTCAAACAA-C-- 880
Query 520 CAACAACAAAGGTTTGCTTCTAAACTTCGAAGACCGAAGCGG-AA-ACTCATGGAGGTTT 577
||| ||| || |||| | |||||| ||||| ||| ||| || | | ||||| ||
Sbjct 881 CAA-AAC---GGCACGCTTTTGAACTTCCAAGACAGAAACGGCAAGA-TG-TGGAGATTC 934
Query 578 CGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTC 637
|||||||| || |||||| ||| || ||||| || ||||| ||||| ||||||||||||
Sbjct 935 CGTTACTCGTATTGGAACTCTAGCCAGAGCTACGTTATGACCAAAGGATGGAGCCGTTTC 994
Query 638 GTCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTT 678
|||||||| || ||||| ||||| |||||||| || |||||
Sbjct 995 GTCAAAGAGAAAAAGCTCGATGCAGGAGACATTGTCTCTTT 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5