BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486705
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61980.1 | Symbols: | serine protease inhibitor, Kazal-type... 924 0.0
> AT3G61980.1 | Symbols: | serine protease inhibitor, Kazal-type
family protein | chr3:22956139-22956883 REVERSE LENGTH=745
Length=745
Score = 924 bits (500), Expect = 0.0
Identities = 626/684 (92%), Gaps = 20/684 (3%)
Strand=Plus/Plus
Query 1 AAACAACACGGTTACGTAAActctctctctctGAGAAAATCCCCAAATCTCCTGAAATTA 60
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAACAACACGGTTACGCAAA----CTCTCTCTGAGAAAATCCCCAAATCTCATGAAATTA 56
Query 61 GGGTTTCAATCATTCGTAACACTTTGAACGCAAAATTAGAAACCTCCTCTCCATTCGCCA 120
|||||||||||| | | ||||||||||||||||||||||||||||||||| |||||
Sbjct 57 GGGTTTCAATCA-T--T----CTTTGAACGCAAAATTAGAAACCTCCTCTCCATCCGCCA 109
Query 121 CGAATCTCTAAGGTTCTTCTGAAGGATTAGATTTCTGGGTTTAAGAAAtctctctctctc 180
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 110 CGAATCTCTAGGGTTCTTCTGAAGGATTAGATTTCTGGGTTTTAGAAA--TCTGTCTCTC 167
Query 181 GTCATCAACAATTCTCGTGATGCCGTCGTTAACACTGAGCATTCCTTTCCTTTTCTTAGT 240
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 168 GTCATCAACAATTCACGTGATGCCGTCGTTAACACTGAGCATTCGTTTCCTTTTCTTAGT 227
Query 241 TCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAATTCCGGCGGCGACGT 300
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 228 TCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAAATCCCGCGGTGACGT 287
Query 301 CTGCCCTCGGGTTTCGGACTCGGG-TGGATGCCCAATCAACTGTTTCCGAGCGGATCCGG 359
|||||||||||| ||| ||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 288 ATGCCCTCGGGTTAAGGA-TCGGGGTGGATGCACAATCAACTGTTTCCGGGCGGATCCGG 346
Query 360 TTTGCGGAGCCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGTG 419
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 347 TTTGTGGAACCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGCG 406
Query 420 CTCGTGTAATCAAAAGAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTG 479
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CTCGCGTAGTCAAAAAAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTG 466
Query 480 GCCAAGCTTTGTTATTGATTCACATTGTTTGGCTCTTCTTGCTTGGACTCTCTCTTCTCG 539
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 467 GACAAGCTTTGTTATTGATTCATATTGTTTGGCTCTTCTTGCTCGGACTCTCTCTTCTCG 526
Query 540 TTGGTGTTTTCTAATCTCTCGAGTGTT-GATGGCGGAATTAGAGGAGCAATTGATATAGA 598
|||||| ||||| |||||| ||| ||| | ||| ||||||||| || |||| | |||||
Sbjct 527 TTGGTGGTTTCTGATCTCTAGAGAGTTAG-TGGTGGAATTAGACAAGGAATT-AGATAGA 584
Query 599 TCACACGTCCTGTGTTTGTT--ATGTGTAGAGCTGAGTATTGTTTTGCTTTGTGTGCTAT 656
|||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 585 TCACACGTCCTGAGTTTGTTGTATGTGTATAGTTGAGTATTGTTTTGCTTTGTGTGCTAT 644
Query 657 ACATATGTAATAGATTCTGTTGCA 680
| ||||||||||||||||||||||
Sbjct 645 ATATATGTAATAGATTCTGTTGCA 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5