BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486706
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61990.1 | Symbols: OMTF3 | S-adenosyl-L-methionine-dependen... 1559 0.0
AT3G62000.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 854 0.0
> AT3G61990.1 | Symbols: OMTF3 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr3:22957054-22958995
REVERSE LENGTH=1222
Length=1222
Score = 1559 bits (844), Expect = 0.0
Identities = 1036/1122 (92%), Gaps = 39/1122 (3%)
Strand=Plus/Plus
Query 8 CGTTCTC-ACTGAGCTTTCCTTTCCTTTTGTTGGTTTTCTGCTTTATCGGCTT-ACTAGC 65
|||| || || |||||||| |||||||||||||||||||||||| ||||| || ||||||
Sbjct 93 CGTTTTCAAC-GAGCTTTCTTTTCCTTTTGTTGGTTTTCTGCTTGATCGG-TTCACTAGC 150
Query 66 TGCCGATGATCTCCCACATAAATCCGG-CGGTGACGTCTGCTCCGGGGGTTCTGATCGTA 124
|||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||| ||
Sbjct 151 TGCCGATGATCTCCAACATAAATCCGGTCGG-GACGTCTGCTCCGGTGGTTCTGATCTTA 209
Query 125 GAACTCCCGATATTCGACTTAACCGACCGAC-GTCCTCCGTCGTCGGAAACTGCCCCG-C 182
|||| ||||||||||| |||||||| ||||| | ||| |||||||||||||| |||| |
Sbjct 210 GAACCCCCGATATTCGTCTTAACCGGCCGACAG-ACTCTGTCGTCGGAAACTG-CCCGAC 267
Query 183 GGAGCCGAGTCCTTTAGTTATGGCTGACGACGAGAAGTACGGTAACAAAATGGTTATCAG 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GGAGGCGAGTCCTTTAGTTATGGCTGACGACGAGAAGTACGGTAACAAAATGGTTATCAG 327
Query 243 TCTCACTCCTCGCCTTTACGACTATGTCCTCAACAACGTTCGCGAGCATGAGGTTTTGAG 302
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 328 TCTCACTCCTCGCCTTTATGACTATGTCCTCAACAACGTTCGTGAGCATGAGATTTTGAA 387
Query 303 GCAACTTCGAGAAGAGACTGCTATTAGTCAAATTCAGGTGTCGCCTGATCAAGCGCAATT 362
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 388 GCAACTTCGAGAAGAAACTGCCATTAGTCAAATTCAGGTGTCACCTGATCAAGCGCAATT 447
Query 363 GCTTGCGATGCTTGTGGAGATTCTTGGAGCAGAAA-GATGTATTGAAGTTGGAGTTTACA 421
|||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 448 GCTTGCAATGCTTGTAGAGATTCTTGGAGC-TAAACGATGTATTGAAGTTGGAGTTTACA 506
Query 422 CGGGATATTCATCATTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTTGTTGCTT 481
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 507 CGGGATATTCATCACTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTTGTTGCCT 566
Query 482 GTGATAAAGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTATGAGCTTGCCGGAGTGT 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 567 GTGATAAAGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCCGGAGTGT 626
Query 542 CTCACAAGGTCACTGTGAAGCATGGTCTTGCAGCAGAATCTTTGATCTCTATGATTCAGA 601
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 627 CTCACAAGGTCACTGTGAAACATGGTCTTGCAGCAGAATCTTTGATGTCTATGATTCAGA 686
Query 602 ACGGTGAAGAGTCCAGCTATGATTTTGCATTTCTCGATGCTGATAAGGATATGTATCAGG 661
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 687 ACGGTGAAGAGTCCAGCTATGATTTTGCATTTCTTGATGCTGATAAGGCGATGTATCAGG 746
Query 662 AGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGATAATG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGATAATG 806
Query 722 TTCTTTGGCATGGATGGGTTGCGGATTCTATGGTAAATGATGAGAGGACCATCAGCCTTA 781
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 807 TTCTTTGGCATGGATGGGTTGCGGATTCTACGGTGAATGATGAGAGGACCATCAGCCTAA 866
Query 782 GAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTATCAATCG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTATCAATCG 926
Query 842 GCGATGGTATGACCATATGCCGCAAGAGGTAATCATCCCTAAAAACCACACAGCTCGCAG 901
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 927 GCGATGGTATGACCATATGCCGCAAGAGGTAATCATCCGTAAAAACCACTCAGCTCGCAG 986
Query 902 TGGACCTGATCCAAGA--GA-GAAGTCTTCAAACATTAAAGGATTGATGAAGCCAAGATA 958
|| ||||| | ||||| || |||||||| |||||| |||||||||||||||||||||||
Sbjct 987 TGAACCTGTTTCAAGATAGAAGAAGTCTTTAAACATAAAAGGATTGATGAAGCCAAGATA 1046
Query 959 TATTATTTCAGTCTCACAAACACAAAAGACTTATCAACTTT-CCCTTTTCAGTCAAAA-- 1015
| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||
Sbjct 1047 TC------CAGTCTCACAAACACTAAAGACTCATCAACTTTTCCCTTTTCAGTCAAAAAT 1100
Query 1016 --G---A-TAA---A----CCAATGTGTGGGCTTATTGGGCCTTGATATGTACTGTTTTC 1062
| | ||| | ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1101 AAGTTGAATAATTGATAAACCAATGTGTGGGCCTATTGGGCTTTGATATGTACTGTTTTC 1160
Query 1063 TATGTCCGTTTCAGGCCTTTTATAAAATCTT-TTGACGACCC 1103
||||||||||| ||||||||||||||||| | || |||||||
Sbjct 1161 TATGTCCGTTTGAGGCCTTTTATAAAATCGTCTT-ACGACCC 1201
> AT3G62000.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:22959053-22961219
REVERSE LENGTH=1268
Length=1268
Score = 854 bits (462), Expect = 0.0
Identities = 694/802 (87%), Gaps = 31/802 (4%)
Strand=Plus/Plus
Query 192 TCCTTTA-GTTATGGCTGACGACGAGAAGTACGGTAACAAA-ATGGTTATCAGTCTCACT 249
||| ||| ||| |||| |||||||| ||||||||||||||| | |||||||||||||||
Sbjct 186 TCC-TTATGTTGTGGCGGACGACGATAAGTACGGTAACAAACA-AGTTATCAGTCTCACT 243
Query 250 CCTCGCCTTTACGACTATGTCCTCAACAACGTTCGCGAGCATGAGGTTTTGAGGCAACTT 309
|||||||||||||||||||||||| |||||| ||||||| | || ||||||||||||||
Sbjct 244 CCTCGCCTTTACGACTATGTCCTCTCCAACGTCCGCGAGCCTAAGATTTTGAGGCAACTT 303
Query 310 CGAGAAGAGA----C----TGCTA-TTAGTCAAATTCAGGTGTCGCCTGATCAAGCGCAA 360
|| ||||||| | ||| | ||| ||||| |||||||||||||||||||||||
Sbjct 304 CGGGAAGAGACTTCCAAAATGCGAGGTAGCCAAATGCAGGTGTCGCCTGATCAAGCGCAG 363
Query 361 TTGCTTGCGATGCTTGTGGAGATTCTTGGAGCAGAAAGATGTATTGAAGTTGGAGTTTAC 420
|||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 364 TTGCTTGCAATGCTTGTACAGATGCTTGCAGCAGAAAGATGTATTGAAGTTGGAGTTTAC 423
Query 421 ACGGGATATTCATCATTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTT-GTTGC 479
||||||||||| ||||||||||||||||| |||||||||||||||||| || || |||||
Sbjct 424 ACGGGATATTCTTCATTGGCTGTGGCGTTAGTTCTACCAGAATCAGGGTGT-TTAGTTGC 482
Query 480 TTGTGATAA-AGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTATGAGCTTGCCGGAG 538
||||| || |||| ||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 483 CTGTGA-AAGAGATTCTAACTCTCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCTGGAG 541
Query 539 TGTCTCACAAGGTCACTGTGAAGCATGGTCTTGCAGCAGAATCTTTGATCTCTATGATTC 598
| ||||||||||| | |||||| || ||||||||||| ||||| |||| || |||||||
Sbjct 542 TCTCTCACAAGGTTAATGTGAAACAAGGTCTTGCAGCTGAATCATTGAAATCCATGATTC 601
Query 599 AGAACGGTGAAG-AGTCCAGCTATGATTTTGCATTTCTCGATGCTGATAAG-GATATGTA 656
|||||||||||| || |||||||||||||||||||| |||||||||||||| | |||||
Sbjct 602 AGAACGGTGAAGGAG-CCAGCTATGATTTTGCATTTGTCGATGCTGATAAGAGG-ATGTA 659
Query 657 TCAGGAGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGA 716
|||||| |||||||||| ||| |||| ||| ||||| |||||||||||||||||||| ||
Sbjct 660 TCAGGACTACTTCGAATTGCTTCTTCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGA 719
Query 717 TAATGTTCTTTGGCATGGATGGGTTGCGGATTCTATGGTAAATGATGAGAGGACCATCAG 776
||||||||||||||||||| | ||| ||||| ||||||| ||||||| || |||||||||
Sbjct 720 TAATGTTCTTTGGCATGGACGAGTTTCGGATCCTATGGTGAATGATGCGAAGACCATCAG 779
Query 777 CCTTAGAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTA-- 834
| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 780 CATTAGGAATTTCAACAAAAAGTTAATGGATGATAAACGTGTAAGCATTAGTATGGTAAG 839
Query 835 T-CA-ATCGGCGATGGTATGACCATATGCCGCAAGAGGTAATCATCCCTAAAAACCACAC 892
| | ||||||||||| ||||| |||||||||||||| || ||||| |||||||| |
Sbjct 840 TACCGATCGGCGATGGCATGACGATATGCCGCAAGAGATAGTCATCAGGAAAAACCA-AT 898
Query 893 AGC-TCGCAGTGGACCTGATCCAAGAGAGAAGTCTTC-AAACATTAAAGGAT-TG-ATGA 948
| || ||||| ||||||||||||||||||||||| |||||| ||||||| | ||||
Sbjct 899 TGGGTCACAGTGAACCTGATCCAAGAGAGAAGTCTTTTAAACATGAAAGGATCTCCATGA 958
Query 949 AGCCAAGATATAT-TATTTCAG 969
|||||||||||| | ||||||
Sbjct 959 AGCCAAGATATACATGTTTCAG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5