BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486707
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62000.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 1471 0.0
AT3G61990.1 | Symbols: OMTF3 | S-adenosyl-L-methionine-dependen... 830 0.0
> AT3G62000.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:22959053-22961219
REVERSE LENGTH=1268
Length=1268
Score = 1471 bits (796), Expect = 0.0
Identities = 885/927 (95%), Gaps = 10/927 (1%)
Strand=Plus/Plus
Query 1 GGGGAAGCAGAAGATGTTGACCGGTTTAGCTCTGAATCGCTGTTCGA-TTTCGGTATGTA 59
||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 27 GGGGAAGCAGAAGATGTCGACCGGTTTAGCTCTGAATCGCTGTTC-AGTTTCGGTATGTA 85
Query 60 GAACGGCCGGTACTTTACTTAACCGGCCAACGGTCTCCGTAGTCAGGAGTTTGAAATTCA 119
||||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 86 GAACGGCCGTTACTTTACTTAACCGGCCAACTGTCTCCGTTGCCAGGAGTTTGAAATTCA 145
Query 120 GTCACCGGCTAATCGGAAACTGCTCGATAGCGCCGGCGGATCCTGT-TGTTGTGGCGGAA 178
||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 146 GTCGCCGGCTAATCGGAAACTGCTCGATAGCGCCGGCGGATCCT-TATGTTGTGGCGGAC 204
Query 179 GACGTA-AAGTACGGTAACAAAGAGGTTATCAGTCTCACTCCTCGCCTTTACGACTATGT 237
|||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 205 GACG-ATAAGTACGGTAACAAACAAGTTATCAGTCTCACTCCTCGCCTTTACGACTATGT 263
Query 238 CCTCTCCAACGTTCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAAT 297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CCTCTCCAACGTCCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAAT 323
Query 298 GCGAGGTAGTCAAATGCAGGTGTCGCCTGATCAAGCGCAATTGCTTGCAATGCTTGTACA 357
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 324 GCGAGGTAGCCAAATGCAGGTGTCGCCTGATCAAGCGCAGTTGCTTGCAATGCTTGTACA 383
Query 358 GCTGCTTGGAGCAGAAAGATGTATTGAAGTTGGAGTTTACACGGGATATTCATCATTGGC 417
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 384 GATGCTTGCAGCAGAAAGATGTATTGAAGTTGGAGTTTACACGGGATATTCTTCATTGGC 443
Query 418 TGTGGCCTTAGTTCTACCAGAATCAGGGTGTCTAGTTGCCTGTGAAAGAGATTCTAACTC 477
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 444 TGTGGCGTTAGTTCTACCAGAATCAGGGTGTTTAGTTGCCTGTGAAAGAGATTCTAACTC 503
Query 478 TCTTGAAGTCGCTAAGAGGTACTACAAGCTCGCTGGAGTCTCTCACAAGGTTAATGTGAA 537
||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 504 TCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCTGGAGTCTCTCACAAGGTTAATGTGAA 563
Query 538 ACATGGTCTTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAGGATCCAGCTA 597
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 564 ACAAGGTCTTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAGGAGCCAGCTA 623
Query 598 TGATTTTGCATTTGTCGATGCTGATAAGAGGATGTATCAGGACTACTTCGAATTGCTTCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TGATTTTGCATTTGTCGATGCTGATAAGAGGATGTATCAGGACTACTTCGAATTGCTTCT 683
Query 658 TCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGT 743
Query 718 TACGGATCCTCTGGCGAATGATGCGAAGACGATCAGCATTAGGAATTTCAACAAAAAGTT 777
| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 744 TTCGGATCCTATGGTGAATGATGCGAAGACCATCAGCATTAGGAATTTCAACAAAAAGTT 803
Query 778 AATGGATGATAAACGTGTAAGCATTAGTATGGTA----CCAATCGGCGATGGCATGACGA 833
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 804 AATGGATGATAAACGTGTAAGCATTAGTATGGTAAGTACCGATCGGCGATGGCATGACGA 863
Query 834 TATGCCGCAAGAGATAATCATCAGGAAAAACCACTTGGGTCACAATGAACCTGATCCAAG 893
|||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 864 TATGCCGCAAGAGATAGTCATCAGGAAAAACCAATTGGGTCACAGTGAACCTGATCCAAG 923
Query 894 AAAGAAGTCTTTTAACCATGAAAGGAT 920
| ||||||||||||| |||||||||||
Sbjct 924 AGAGAAGTCTTTTAAACATGAAAGGAT 950
> AT3G61990.1 | Symbols: OMTF3 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr3:22957054-22958995
REVERSE LENGTH=1222
Length=1222
Score = 830 bits (449), Expect = 0.0
Identities = 690/802 (86%), Gaps = 34/802 (4%)
Strand=Plus/Plus
Query 132 TCGGAAACTGCTCGATAGCGCCGGCGGA-TCCTGTT-GTTGTGGCGGAAGACGTA-AAGT 188
||||||||||| || | || ||| || |||| || ||| |||| || |||| | ||||
Sbjct 252 TCGGAAACTGCCCG--A-CGGAGGC-GAGTCCT-TTAGTTATGGCTGACGACG-AGAAGT 305
Query 189 ACGGTAACAAAGA-GGTTATCAGTCTCACTCCTCGCCTTTACGACTATGTCCTCTCCAAC 247
||||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 306 ACGGTAACAAA-ATGGTTATCAGTCTCACTCCTCGCCTTTATGACTATGTCCTCAACAAC 364
Query 248 GTTCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAATGCGAGGTAGT 307
||||| |||| | ||||||||| ||||||||| ||||| ||| || || ||||
Sbjct 365 GTTCGTGAGCATGAGATTTTGAAGCAACTTCGAGAAGAAACTGCC---AT------TAGT 415
Query 308 CAAATGCAGGTGTCGCCTGATCAAGCGCAATTGCTTGCAATGCTTGTACAGCTGCTTGGA 367
||||| |||||||| ||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 416 CAAATTCAGGTGTCACCTGATCAAGCGCAATTGCTTGCAATGCTTGTAGAGATTCTTGGA 475
Query 368 GCAGAAA-GATGTATTGAAGTTGGAGTTTACACGGGATATTCATCATTGGCTGTGGCCTT 426
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 476 GC-TAAACGATGTATTGAAGTTGGAGTTTACACGGGATATTCATCACTGGCTGTGGCGTT 534
Query 427 AGTTCTACCAGAATCAGGGTGTCTAGTTGCCTGTGA-AAGAGATTCTAACTCTCTTGAAG 485
|||||||||||||||||| |||| ||||||||||| || |||| ||||| |||||||||
Sbjct 535 GGTTCTACCAGAATCAGGGCGTCTTGTTGCCTGTGATAA-AGATGCTAACGCTCTTGAAG 593
Query 486 TCGCTAAGAGGTACTACAAGCTCGCTGGAGTCTCTCACAAGGTTAATGTGAAACATGGTC 545
| ||||||||||||||| |||| || ||||| ||||||||||| | ||||||||||||||
Sbjct 594 TTGCTAAGAGGTACTACGAGCTTGCCGGAGTGTCTCACAAGGTCACTGTGAAACATGGTC 653
Query 546 TTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAG-GATCCAGCTATGATTTT 604
||||||| ||||| |||| || ||||||||||||||||||| | |||||||||||||||
Sbjct 654 TTGCAGCAGAATCTTTGATGTCTATGATTCAGAACGGTGAAGAG-TCCAGCTATGATTTT 712
Query 605 GCATTTGTCGATGCTGATAAGAG-GATGTATCAGGACTACTTCGAATTGCTTCTTCAACT 663
|||||| | |||||||||||| | |||||||||||| |||||||||| ||| |||| |||
Sbjct 713 GCATTTCTTGATGCTGATAAG-GCGATGTATCAGGAGTACTTCGAATCGCTACTTCGACT 771
Query 664 TGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGTTACGGA 723
||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| ||||
Sbjct 772 CGTCAGGGTTGGTGGAGTCATTGTGATTGATAATGTTCTTTGGCATGGATGGGTTGCGGA 831
Query 724 TCCT-CTGGCGAATGATGCGAAGACGATCAGCATTAGGAATTTCAACAAAAAGTTAATGG 782
| || | || |||||||| || ||| |||||| | || |||||||||||||| |||||||
Sbjct 832 TTCTAC-GGTGAATGATGAGAGGACCATCAGCCTAAGAAATTTCAACAAAAAATTAATGG 890
Query 783 ATGATAAACGTGTAAGCATTAGTATGGTACCAATCGGCGATGGCATGACGATATGCCGCA 842
||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 891 ATGATCAACGTGTAAGCATTAGTATGGTATCAATCGGCGATGGTATGACCATATGCCGCA 950
Query 843 AGAGATAATCATCAGGAAAAACCACTTGGGTCACAATGAACCTGATCCAAGA-A-A-GAA 899
|||| |||||||| | |||||||||| | || || |||||||| | ||||| | | |||
Sbjct 951 AGAGGTAATCATCCGTAAAAACCACTCAGCTCGCAGTGAACCTGTTTCAAGATAGAAGAA 1010
Query 900 GTCTTTTAACCATGAAAGGATT 921
|||||| ||| || ||||||||
Sbjct 1011 GTCTTTAAAC-ATAAAAGGATT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5