BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486710
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62020.1 | Symbols: GLP10 | germin-like protein 10 | chr3:22... 1190 0.0
> AT3G62020.1 | Symbols: GLP10 | germin-like protein 10 | chr3:22971358-22972268
REVERSE LENGTH=824
Length=824
Score = 1190 bits (644), Expect = 0.0
Identities = 744/791 (94%), Gaps = 11/791 (1%)
Strand=Plus/Plus
Query 1 ATATCACACAGTTTCAAATTAGAGCTTCGAATCTAGTTTACTTGCTCTTCTACAGTACAT 60
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 1 ATATCACACAGTTTCAAATTAGAGCTTCAAATCTAG-TTACTTGTTCTTCTACAGTACAT 59
Query 61 GATCAAAA-T------CATGGACTCGAGATGTTATGGCTTCTTCTTTGCTCTGTTCTCTT 113
||||||| | ||||||||||||||||| ||||||||||||| || |||| |||
Sbjct 60 CATCAAAAGTCAAAACCATGGACTCGAGATGTTTTGGCTTCTTCTTTACTTTGTTATCTC 119
Query 114 TAACTGTGGTTGCTCTTGCTTACGATCCTGACACGCTTCAAGATCTCTGCGTTGCAGATC 173
||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 120 TAAATGTGATTGTTCTTGCTTACGATCCTGACACACTTCAAGATCTCTGCGTTGCGGATC 179
Query 174 GCTCTTCAGGGATCAAAGTGAATGGTTTCACATGTAAGCCGGAATCAAACATCACCGCCT 233
|| |||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 180 GCACTTCAGGGATAAAAGTGAATGGTTTCACATGTAAACCCGAATCAAACATCACCGCTT 239
Query 234 CAGATTTTTTCTTCGCCGGAATCGGAAAACCCGCCGTCGTTAACAACACAGTCGGGTCAG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGATTTTTTCTTCGCCGGAATCGGAAAACCCGCCGTCGTTAACAACACAGTCGGGTCAG 299
Query 294 CCGTCACGGGAGCAAACGTAGAGAAGATCGCAGGGCTTAACACGCTCGGAGTCTCACTCG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGTCACGGGAGCAAACGTAGAGAAGATCGCAGGGCTTAACACGCTCGGAGTCTCACTCG 359
Query 354 CGCGTATCGACTACGCTCCCGGAGGTTTAAACCCGCCGCACACGCATCCACGCGCCACTG 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 CGCGTATCGACTACGCTCCCGGAGGTTTAAACCCGCCGCACACGCATCCACGCGCCACCG 419
Query 414 AAGTGATCTTCGTTTTGGAAGGCGAGCTTGACGTCGGATTCATAACGACGGCGAACAAGC 473
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 AAGTGATCTTCGTTTTGGAAGGCGAGCTTGACGTTGGATTCATAACGACGGCGAACAAGC 479
Query 474 TATTCGCTAAGACGGTGAAGAAAGGAGAAGTTTTCGTCTTCCCGAGAGGATTGATTCATT 533
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 480 TCTTCGCTAAGACGGTGAAGAAAGGAGAAGTGTTCGTCTTCCCTAGAGGATTGATTCATT 539
Query 534 ACCAGAAGAACAACGACAAAGCGAAACCTGCGTCGGTGATCTCTGCGTTCAACAGTCAGT 593
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 540 ACCAGAAAAACAACGACAAAGCGAAACCGGCGTCGGTGATCTCTGCGTTCAACAGTCAAT 599
Query 594 TACCGGGAACACAATCGATTGCCGCCACGCTATTCACGGCCACTCCGGCGATTCCGGATC 653
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 TACCGGGAACACAATCGATCGCCGCCACGCTATTCACAGCCACTCCGGCGATTCCGGATC 659
Query 654 ACGTTTTAACGACGGCGTTTCAGATCGGAACGAAAGAAATCGAAAAGATCAAATCCAAGT 713
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 660 ACGTTTTAACGACGACGTTTCAAATCGGAACGAAAGAAATCGAAAAAATCAAATCTAAGT 719
Query 714 TTGCTCCCAAGAAAGTCTAAAAATTGCGt--ttgt-tatatatatttttaattttattaa 770
|||||||||||||||||||||||| |||| || | |||||||||||| |||||||||||
Sbjct 720 TTGCTCCCAAGAAAGTCTAAAAATCGCGTCGTTATATATATATATTTTAAATTTTATTAA 779
Query 771 tttgtttttaA 781
|| ||||||||
Sbjct 780 TTGGTTTTTAA 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5