BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486713
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62060.1 | Symbols: | Pectinacetylesterase family protein |... 2475 0.0
> AT3G62060.1 | Symbols: | Pectinacetylesterase family protein
| chr3:22979955-22982944 FORWARD LENGTH=1638
Length=1638
Score = 2475 bits (1340), Expect = 0.0
Identities = 1542/1636 (94%), Gaps = 27/1636 (2%)
Strand=Plus/Plus
Query 1 ttttctttttcaaattcatttttatttttGTCTTCATGCAAGTGAT-AAACACTAAAGAG 59
|||||||||||||| ||||||||||||| | ||||||||||||||| ||| ||||||| |
Sbjct 6 TTTTCTTTTTCAAAATCATTTTTATTTTCGACTTCATGCAAGTGATAAAAGACTAAAGTG 65
Query 60 TAAGACTAA-AAGACTATCGTAATCGATCCTTAATCCAAATTTTCGCGCTCGATTCGTCT 118
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 66 TAAGACTAATAAGACTATCGTCATCGATCCTTAATCCAAATTTTCGCGCTCGATTCGTCT 125
Query 119 TCTCTGTATCTCCCGGA-------G-CTTGGGC-G--GAGGAGATGAAAAGCGTGTTGTT 167
| ||||||||||||||| | ||||||| | |||||||||| ||| |||||||
Sbjct 126 TTTCTGTATCTCCCGGAGCTCCGGGACTTGGGCGGAAGAGGAGATGAGGAGCTTGTTGTT 185
Query 168 GTGGGTTGCGGTGGTCGTGTGCTTGCTATGTTCAGTCACGGCGGTGATTCGGAGCGGATC 227
|||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 186 GTGGATTGCGGTGGTCGTGTGCTTGCTATGTTCAGTCGCGGCGGTGGTTCAAAGCGGATC 245
Query 228 TAGCGATGGATTTGGGAAACCCATAGATACTGATACTGCGATATCTTTGCTGGAGTATAA 287
|||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 246 TAGCGACGGATTTGGGAAACCCAGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAA 305
Query 288 ATTGATGGCGCCTTCGGTTCCAATGGTACCTCTCACCTTGATTCGA-GGAGCTGACTCTA 346
||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 306 ATTGATGGCGCCTTCGGTTCCAATGATACCTCTCACCTTGATTC-ACGGAGCTGACTCTA 364
Query 347 AAGGAGCTGTGTGCTTAGATGGGACACTACCTGGTTATCATTTAGATCGTGGTTTTGGAT 406
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 365 AAGGAGCTGTGTGCTTAGATGGGACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGAT 424
Query 407 CAGGTGCTAACAGTTGGCTTATCCAGCTTGAGGGTGGAGGATGGTGTAACAACCATAGGA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CAGGTGCTAACAGTTGGCTTATCCAGCTTGAGGGTGGAGGATGGTGTAACAACCATAGGA 484
Query 467 GCTGTGTTTATCGCAAAACAAGTCGGCGTGGTTCCCCTAAATTCATGGAAAAAGCTTTGG 526
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 485 GCTGTGTGTATCGCAAAACAAGTCGACGTGGTTCCTCTAAATTCATGGAAAAAGCTTTGG 544
Query 527 CCTTCACTGGAATTTTGAGCAATAAATCTGAAGAGAATCCTGACTTCTTTAATTGGAACA 586
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 545 CCTTCACTGGAATTTTGAGCAATAGATCTGAAGAGAATCCTGACTTCTTTAATTGGAACA 604
Query 587 GGATCAAGTTGCGCTACTGTGATGGTGCGTCTTTCTCTGGCGATAGTCAGGACGAGAGTT 646
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 605 GGATCAAGTTGCGTTACTGCGATGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTT 664
Query 647 CTCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTATGGAAGAATTCCTGTCTT 706
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CGCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTATGGAAGAATTCCTGTCTT 724
Query 707 TAGGAATGAAGCAAGCAAACCAGGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTT 766
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 725 TAGGCATGAAGCAAGCAAACCAGGCTCTGCTCTCTGGATGTTCAGCTGGAGGATTAGCTT 784
Query 767 CCATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTAGTTCCACGAAAGTAAAATGCT 826
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTAGTTCCACGAAAGTAAAATGCT 844
Query 827 TAAGTGACGCTGGAATGTTTCTGGA-TGCAGTAGATGTCTCTGGTGGCCACTCACTTAGG 885
||||||| ||||||||||||||||| | |||| ||||||||||| |||||||| ||||||
Sbjct 845 TAAGTGATGCTGGAATGTTTCTGGACT-CAGTGGATGTCTCTGGGGGCCACTCGCTTAGG 903
Query 886 AATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGT 963
Query 946 ACAAACCATTTGGATCCTACTTCGTGCTTCTTTCCACAGAACCTGGTTTCAGACATTAAA 1005
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 964 ACAAACCATTTGGATCCTACTTCGTGCTTTTTTCCCCAGAACTTGGTTTCAGACATTAAA 1023
Query 1006 ACCCCAATGTTTCTTCTCAACACAGCATATGACTCTTGGCAGATCCAAGAGAGCTTAGCT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ACCCCAATGTTTCTTCTCAACACAGCATATGACTCTTGGCAGATCCAAGAGAGCTTAGCT 1083
Query 1066 CCTCCAACTGCTGATCCAGGTGGCATCTGGAAGGCATGCAAATCAGATCACTCGCGATGT 1125
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1084 CCTCCTACTGCTGATCCAGGCGGTATCTGGAAGGCATGCAAATCAGATCACTCGCGATGT 1143
Query 1126 AATTCATCGCAGATCCAATTTTTCGAAGAATTCAGGACCCAAATGGTGCTTGCTGTAAAC 1185
|||||||| ||||||||||| ||| |||||||||||| |||||| || |||||||||||
Sbjct 1144 AATTCATCACAGATCCAATTCTTCCAAGAATTCAGGAATCAAATGCTGTTTGCTGTAAAC 1203
Query 1186 TCATTTTCAAACTCTGACCAGAACGGTCTTTATATAAACTCTTGCTTCGCCCATTGTCAG 1245
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1204 TCATTCTCAAACTCTGACCAGAACGGTCTTTATATAAACTCTTGCTTCGCGCATTGTCAG 1263
Query 1246 ACTGAAAGACAGGACACTTGGTTTGCTCAAGATTCTCCTCAACTAAACGGAAAGAGAGTA 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ACTGAAAGACAGGACACTTGGTTTGCTCAAGATTCTCCTCAACTAAACGGAAAGAGAGTC 1323
Query 1306 GCAGAGTCTGTAGGTGACTGGTACTTCGACCGGGCAAACAATGTCAAAGCCATCGACTGT 1365
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 1324 GCAGAGTCTGTAGGTGACTGGTACTTCGACCGAGCAAAAAATGTCAAAGCTATCGATTGT 1383
Query 1366 CCTTACCCGTGTGACACAACATGTCACAATCTGATTTTCGAGTGAGTAAATCGTTAAACC 1425
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1384 CCTTACCCTTGTGACACAACATGTCACAATCTGATTTTCGAGTGAGTAAATCGTTGAACC 1443
Query 1426 CCATTTCTCTGATTCTTTCAAACTTATA-------CCATTATTGC-TTCAAAATCCTTCC 1477
|||||||||||||||||||||||||||| |||||||||| || ||| |||||||
Sbjct 1444 CCATTTCTCTGATTCTTTCAAACTTATAAGTTATACCATTATTGCCTT-AAATTCCTTCC 1502
Query 1478 ATATTTATCCTAACTTCCAAATCTGTAATATTGGTGTATCTCAAATGAGAATCATTTTGT 1537
|||||||||||||||||||||| || || ||| |||||||||||||||||||||||| ||
Sbjct 1503 ATATTTATCCTAACTTCCAAATGTGCAACATTTGTGTATCTCAAATGAGAATCATTTAGT 1562
Query 1538 TTGTCGATTCAGATCATAATTTATATTTGTATGAC-TTCATTTTTCGATTGAAATAAGCT 1596
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1563 TTGTCGATTCAGATCATAATTTATATTTGCATGACCTTGATTTTTCGATTGAAATAAGCT 1622
Query 1597 TTCTTTCGATGTTTAT 1612
||||||||||||||||
Sbjct 1623 TTCTTTCGATGTTTAT 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5