BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486715
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62080.2 | Symbols: | SNF7 family protein | chr3:22986174-2... 2627 0.0
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fac... 355 7e-97
> AT3G62080.2 | Symbols: | SNF7 family protein | chr3:22986174-22988777
FORWARD LENGTH=1666
Length=1666
Score = 2627 bits (1422), Expect = 0.0
Identities = 1551/1615 (96%), Gaps = 2/1615 (0%)
Strand=Plus/Plus
Query 1 TCTCTCCGACGATCTCCGTATAAAACTTAGTGCGGCGGGAAATCGACTTTCAAATTCGCA 60
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 53 TCTCTCCGACGATCTTCGTATAAAACTTAGTCCGGCGGGAAATCGACTTTCAAATTCGCA 112
Query 61 GGATTCTGTCGAAATTCTTGAAATGGATTCGGAAGCTGTGAAGGAGTTTATACGAAGGGA 120
|||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 113 GGATTCTGTCGATATTCTTGAAATGGATCCTGAAGCTGTGAAGGAGTTTATACGAAGGGA 172
Query 121 AGTTCCAGATTGGGACGATGAGGTGGTGACGACGGCTAGATTCAAGGCGTTTAGTGGGCA 180
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 173 AGTTCCAGATTGGGACGATGAGGTGGTGGCGATGGCTAGATTCAAGGCGTTTAGTGGTCA 232
Query 181 GAGATCCGATTGGGAACTTAAATTTCAGTTTTGGCGTGATTTGATCCTCAAGGTTTCGCG 240
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 233 GAGGTCCGATTGGGAACTTAAATTTCAGTTTTGGCGTGATTTGATCATCAAGGTTTCGCG 292
Query 241 TCAGTTTGGGTTGTTCATCATTGATCCTGTTAAGGTGAAGAAGGCGTGGTTTAATCGAGG 300
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 293 TCAGTTTGGGTTGTTCATCATTGATCCTGTCCAGGTGAAGAAGGCGTGGTTTGATCGAGG 352
Query 301 AGGAATAACGCCTTTATGCATTGATCATGTTCTGTTATTGATGCATAGTGAAGGTGATGT 360
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 353 AGGAATGACGCCTTTATGCATTGATGATGTTGTGTTATTGATGCATAGTGAAGGTGATGT 412
Query 361 TGTGCGGATTAGCGATATTGATGATCCGGGTAGTGGTCGTATTTCTCGTTTATTGAGGAC 420
|||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 413 TGTGCGGATTAGTGATCTCGATGATCCCGGTAGTGGTCGTATTGCTCGTTTATTGAGGAC 472
Query 421 AGTGAGGAACTTGATGGTTCGACAGTCAGTGAAGCCGGAAGAGATTCTGGAAACTAAACT 480
||||| |||||| ||||||| |||| ||||||||| ||||||||||||||||| || |||
Sbjct 473 AGTGAAGAACTTAATGGTTCAACAGCCAGTGAAGCAGGAAGAGATTCTGGAAAATACACT 532
Query 481 TGTTTTTGTCCCACTCTTGAAGGAGAAGGCTGCTGACGTGGTGAATATATTATCTGAGGG 540
|||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 533 TGTTCTTGTTCCACTCTTGAAGGAGAAGGCGGCTGACGTGGTGAAGATATTATCTGAGGG 592
Query 541 ACACTGGACTTCTACTTGTGTTGTCACGCTGAAGAAGTTTCGGAATTTGTGCAACGGCTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 ACACTGGACTTCTACTTGTGTTGTCACGCTGAAGAAGTTTCGGAATTTGTGCAACGGTTC 652
Query 601 GAATGAGGCATCTGCTGTTTTGAGTCACTTGTCAGGTTGTGGAAAAGCGCATAAAATCTC 660
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 653 GAATGAGGCTTCAGCTGTTTTGAGTCACTTGTCAGGGTGTGGAAAAGCGCATAAAATCTC 712
Query 661 TATCAATCGGGGAGAACTGATCGAGGGCGTTAAAGTGTCCTTTTCACAAGCAGCACTTCC 720
||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||
Sbjct 713 TATCAATCGGGGAGAACTGATTGAGGGTGTTAAGGTGTCCTTTTCACAAACAGCACTTCC 772
Query 721 CAGTATCTCAACTTTAGACTGTGATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCCA 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGGTATCTCAACTTTAGACTGTGATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCCA 832
Query 781 AGATCAACTTGAAGTGATGGACCAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCATC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AGATCAACTTGAAGTGATGGACCAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCATC 892
Query 841 TCTAAAGTCTGGACACAGGAAAGTTGCTCTAAGGCATGCAAGGGAATTGAAGTTGGCGAC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 893 TCTAAAGTCTGGACACAGGAAAGTTGCTCTAAGGCATGCAAGGGAATTGAAGGTGGTGAC 952
Query 901 TGAGAGCAGAGAAAAATGCACGTCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TGAGAGCAGAGAAAAATGCACGTCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTAT 1012
Query 961 AGCGGATTCCGAATCTACGAAAATGGTCTCAGAAGCAATCAAAACTGGAGCTAGGGTTAT 1020
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1013 AGCGGATTCCGAATCTACGAAAATGGTCTCAGAAGCAATTAAAACTGGAGCTAGGGTTAT 1072
Query 1021 GAAGGACGTCAAGATCAGTGCAGATGATGTTCATGACTATTTAGAAGAACTTGAGGAAAC 1080
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 GAAGGACATCAAGATCAGTGCAGATGATGTTCATGACTATCTAGAAGAACTTGAGGAAAC 1132
Query 1081 TATTGAATCACAGAAGCAAGTCGAAAAAGCTCTCGAATCAGCTCCATATCCAGATACTGA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1133 TATTGAATCACAGAAGCAAGTCGAAAAAGCTCTCGAATCAGCTCCATATCCAGATATTGA 1192
Query 1141 TGATGAAAATATCGAAGAAGAATTACTGGAATTAGAGATGGACCTTGAAAGTGAAAGTTC 1200
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1193 TGATGAAGATATCGAAGAAGAATTACTGGAACTAGAGATGGACCTTGAAAGTGAAAGTTC 1252
Query 1201 TCAGGTCCTACCAGCGACTTCAGATACTGCAGATTCACTGACTGAGATGTTCTCAGAGCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TCAGGTCCTACCAGCGACTTCAGATACTGCAGATTCACTGACTGAGATGTTCTCAGAGCT 1312
Query 1261 TAAACTTGGCAAGACGAAACAAACATTGGAAGAGCAAGCTACTGAGCCAGCTCGGATGAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1313 TAAACTTGGCAAGACGAAACAAACATTGGAAGAGCAAGCTACTGAGCCAGCTCAGATGAA 1372
Query 1321 AGATAGCGGAAAAAAGATTCTTGAAGCAGCATAGCTGAACAATGCATCTTCATTGTGGTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1373 AGATAGCGGAAAAAAGATTCTTGAAGCAGCATAGCTGAACAATGCATCTTCATTGCGGTG 1432
Query 1381 CGATCTCTTCTCTTACTGTTGTACTTAGAGAAGAAATACACTCAGTATCATATAAATAGA 1440
|||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1433 CGATCTCTTCTCTTCCTGTTGTTCTTAGTGAAGAAATACACTCAGTATCATATAAATAGA 1492
Query 1441 ATAGAAACGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTCGGATTCAAGA 1500
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1493 ATAGAACCGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTTGGATTCTAGA 1552
Query 1501 AACAATAGCTTCACTCCATTGTATAAAGTCAGGAGCTTGTTTCATAAACAGAGAGGAAGG 1560
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1553 AACAATAGCTTCACTCCATTGTATAAAGTCAGCAGCTTGTTTCATAAACAGAGAGGAACG 1612
Query 1561 TCGAATGATGATTTTGATCACTCCGATAGTGGTT-GATAATTTATTAATGTTTCT 1614
|||| | |||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1613 TCGAGTTATGATTTTTATCACTCCGATAGTG-TTCGATAATTTATTAATGTTTCT 1666
> AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22988547-22990709 REVERSE LENGTH=1805
Length=1805
Score = 355 bits (192), Expect = 7e-97
Identities = 219/232 (94%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 1384 TCTCTTCTCTTACTGTTGTACTTAGAGAAGAAATACACTCAGTATCATATAAATAGAATA 1443
||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1805 TCTCTTCTCTTCCTGTTGTTCTTAGTGAAGAAATACACTCAGTATCATATAAATAGAATA 1746
Query 1444 GAAACGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTCGGATTCAAGAAAC 1503
||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1745 GAACCGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTTGGATTCTAGAAAC 1686
Query 1504 AATAGCTTCACTCCATTGTATAAAGTCAGGAGCTTGTTTCATAAACAGAGAGGAAGGTCG 1563
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1685 AATAGCTTCACTCCATTGTATAAAGTCAGCAGCTTGTTTCATAAACAGAGAGGAACGTCG 1626
Query 1564 AATGATGATTTTGATCACTCCGATAGTGGTT-GATAATTTATTAATGTTTCT 1614
| | |||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1625 AGTTATGATTTTTATCACTCCGATAGTG-TTCGATAATTTATTAATGTTTCT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5