BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486720
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62130.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 2730 0.0
> AT3G62130.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr3:23004931-23007006 FORWARD
LENGTH=1863
Length=1863
Score = 2730 bits (1478), Expect = 0.0
Identities = 1707/1813 (94%), Gaps = 33/1813 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCGATTTGGGATTCGAGACGAAACCCTAGCTCTGA-TTTTTT--ATTCCGAT 57
|||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 6 TCTCTCTCTCAATTTGGGATTCGAGACGAAACCCTAGCTCTGATTTTTTTCAATTCCGAT 65
Query 58 GGAGTCGGGCGAGCGGCGCAATGGCGATTCGATGAGTCACAATCACCGCGCACCGAAGAA 117
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GGAGGCGGGAGAGCGGCGCAATGGCGATTCGATGAGTCACAATCACCGCGCACCGAAGAA 125
Query 118 GCCACGCCTCGTTGGGTTATTATCCGAGTCAGATATCGACTCCGAGTTCGCTCACCACCA 177
|||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 126 GCCACGTCTCGCTGGGTTATTAACCGAGTCAGATATCGACTCTGAGTTCGCTCACCACCA 185
Query 178 GACCGGTGTTGCCAGAATCAACAACGGTAGCTTCGGCTGCTGTCCTGGTTCCGTTCTCGA 237
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 186 GACCGGTGTTGCCAGAATCAACAACGGTAGCTTCGGGTGCTGTCCTGGCTCCGTTCTCGA 245
Query 238 GGCGCAGCGTGAGTGGCAGCTTCGTTATCTCCGTCAGCCTGATGAGTTCTACTTCAACGG 297
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GGCGCAACGCGAGTGGCAGCTTCGTTATCTCCGTCAGCCTGATGAGTTCTACTTCAACGG 305
Query 298 TCGCCGTCGTGGACTTCTCGCTTCTCGAACTGTGATCAGTGACCTAATCAACGCCGATGA 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTCCGTCGTGGACTTCTCGCTTCTCGAACTGTGATCAGTGACCTAATCAACGCCGATGA 365
Query 358 TGTTGACGAGGTCTCGCTCGTTGATAACGCAACCACTGCTGCTGCTATTGTTCTTCAGAA 417
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 366 TGTTGATGAGGTCTCTCTCGTTGATAACGCCACCACTGCTGCTGCTATTGTTCTTCAGAA 425
Query 418 AGTTGGAAGGTGTTTCTCTGAAGGGAAGTATAAGAAGGAAGATACTGTAGTGATGTTTCA 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AGTTGGAAGGTGTTTCTCGGAAGGGAAGTATAAGAAGGAAGATACTGTAGTGATGTTTCA 485
Query 478 CTGTGCGTTTCAGAGTGTGAAGAAGTCGATTCAGGCTTATGTCTCTCGTGTGGGAGGTTC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CTGTGCGTTTCAGAGTGTGAAGAAGTCGATTCAGGCTTATGTCTCTCGTGTGGGAGGTTC 545
Query 538 TACTGTTGAGGTTAGGTTACCTTTCCCTGTTAATTCGAACGAAGAGATTATCTCCAAGTT 597
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 TACTGTTGAGGTTAGGTTACCTTTCCCTGTAAATTCGAACGAAGAGATTATCTCCAAGTT 605
Query 598 TAGAGAAGGATTAGAGAAAGGTAGAGCCAATGGTAGAACGGTTAGGTTAGCTATCATTGA 657
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 606 TAGAGAAGGACTAGAGAAAGGTAGAGCGAATGGTAGAACGGTTAGGTTAGCTATCATTGA 665
Query 658 CCATATAACGTCGATGCCGTGTGTTTTGATGCCGGTACGAGAATTGGTTAAAATCTGCAG 717
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 666 TCATATAACGTCGATGCCGTGTGTTTTGATGCCGGTACGAGAATTGGTTAAGATCTGCAG 725
Query 718 AGAAGAAGGTGTGGAGCAGGTTTTTGTTGATGCAGCTCATGCCATTGGTAGTGTTAAAGT 777
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGAGGAAGGTGTGGAGCAGGTTTTTGTTGATGCAGCTCATGCCATTGGTAGTGTTAAAGT 785
Query 778 TGATGTTAAAGAAATCGGAGCTGATTACTATGTGAGTAATCTACATAAATGGTTCTTTTG 837
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 786 TGATGTGAAAGAAATCGGAGCTGATTACTATGTGAGTAATCTGCATAAATGGTTCTTTTG 845
Query 838 TCCGCCATCTATCGCGtttttttATTGTAAGAAACGTGGTTCTGAGTCTGATGTTCATCA 897
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCCACCGTCTATCGCGTTTTTCTATTGTAAGAAACGTGGTTCTGAGTCTGATGTTCATCA 905
Query 898 CCCTGTGGTGTCTCATGAGTTTGGAAATGGTTTGCCTACAGAGAGTGCCTGGATTGGGAC 957
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 906 CCCTGTGGTGTCTCATGAGTTTGGAAATGGTTTGCCTATAGAAAGTGCCTGGATTGGGAC 965
Query 958 TAGGGATTACAGTTCGCAGCTTGTGGTTCCATCGGTAATGGAGTTTGTAAACAGGTTCGA 1017
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 966 TAGGGATTACAGTTCACAGCTTGTGGTTCCATCTGTGATGGAGTTTGTAAACAGGTTCGA 1025
Query 1018 GGGAGGGATCGAAGGGATTATGATTAGGAACCATGATGAAGCTGTTAGAATGGGGTTAAT 1077
||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| |||||
Sbjct 1026 GGGAGGGATGGAAGGGATAATGATGAAGAACCATGATGAAGCTGTTAGAATGGGTTTAAT 1085
Query 1078 GCTGGCTGATGCTTGGGGAACGAATCTCGGGTCACCTCCTGAAATGTGTGTTGGGATGGT 1137
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1086 GCTGGCTGATGCTTGGGGAACGAATCTAGGGTCACCTCCAGAAATGTGTGTTGGGATGGT 1145
Query 1138 TATGATCGGTTTACCTTCAAAACTTTGTGTTGAAAGTGATGAAGATGCTACTAAGTTGCG 1197
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 1146 TATGATCGGTTTACCTTCAAAACTCTGTGTTGGAAGTGATGAAGATGCTATTAAGTTGCG 1205
Query 1198 GTCATATCTGCGGGTGCATTACGCAGTCGAGGTTCCAGTTTATTT-TCTCGGATTGAGGG 1256
||||||||||||||| |||||| |||| ||||||||||||| ||| ||||||||||||||
Sbjct 1206 GTCATATCTGCGGGTTCATTACTCAGTTGAGGTTCCAGTTT-TTTATCTCGGATTGAGGG 1264
Query 1257 ATGGAGAGGAAGGAGTGAAAGACAAAGACAGTGGACTAATTACTGCCTATGTTCGGATCT 1316
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 ATGGAGAGGAAGGAGTGAAAGACAAAGACAGTGGACTAATTACTGCGTATGTTCGGATCT 1324
Query 1317 CTCATCAGATTTATAACAAAACTGAGGATTATGAGAGATTGAGAGACGCAATAACAGAGT 1376
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CTCATCAGGTCTATAACAAAACTGAGGATTATGAGAGATTGAGAGACGCAATAACAGAGT 1384
Query 1377 TAGTCAAGGATCAAATGACATGTCAAAACCTTCCTTCAGTGTAGTGACCAGGTATACTTT 1436
||||||||||||| ||||| ||||||||||||||| || |||||| ||||| ||||||||
Sbjct 1385 TAGTCAAGGATCAGATGACTTGTCAAAACCTTCCTGCATTGTAGTAACCAGATATACTTT 1444
Query 1437 GATAATCCACAAGGGCCTCATTCAGACTCTTTCATAGATCAAGCACATGTTTCGGGTGTA 1496
||||||||||||| |||||||| ||||||||||||||||||| | || ||| ||||
Sbjct 1445 GATAATCCACAAGAGCCTCATTGAGACTCTTTCATAGATCAA-C---TGC--CGG-TGTA 1497
Query 1497 ACAATAAGGCGTTGGAAGAGCCACGAGAAAAGATTCCAGAGATAACATTTATTGATGAGC 1556
||||||||||| ||||||||||||| | ||||||||| ||| |||||| |||||||||||
Sbjct 1498 ACAATAAGGCGATGGAAGAGCCACGGGCAAAGATTCCGGAGGTAACATGTATTGATGAGC 1557
Query 1557 TTGTGGAGGAGCGGCTTGCAATGGAAGAAGAAGCTAACCTTGAGAGGCCCTTTCTTTT-A 1615
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1558 TTGTGGAGGAGCGGCTTGCAATGGAAGAAGAAGCTAACCTTGAGAGGCCCTCTCTTTTTA 1617
Query 1616 TTAGTCTTTT-TAACGTTTAACGGCTTTGTATGATGATTATTGCAAATAAAATGATGTTC 1674
|||||||||| |||||||||||||||||||||||| | |||||||||||||| |||| |
Sbjct 1618 TTAGTCTTTTATAACGTTTAACGGCTTTGTATGAT--T-ATTGCAAATAAAATCATGTGC 1674
Query 1675 ATCTAATCT-ATCTTCCTCAAACATTCTGCTTTCGAAT-T---GTCGCAATTCCAATAAC 1729
|||||||| |||||||||||||||||||||| ||||| | |||||| |||||||||
Sbjct 1675 GTCTAATCTTATCTTCCTCAAACATTCTGCTTGCGAATCTCCTGTCGCAGTTCCAATAAT 1734
Query 1730 TTTTCCTTATTGAAAACTTTTTATTATCTCACATTGATAAACAATAAGCATATTCATACA 1789
|||||||||||||||||||||| |||||||||| || ||||||||||| |
Sbjct 1735 TTTTCCTTATTGAAAACTTTTTCC---CTCACATTGA-AA-------GCATATTCATAGA 1783
Query 1790 TATGTAATGACAC 1802
|||||||||||||
Sbjct 1784 TATGTAATGACAC 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89156167920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5