BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486722
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62110.1 | Symbols: | Pectin lyase-like superfamily protein... 2739 0.0
> AT3G62110.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:22997031-23000041 REVERSE LENGTH=2142
Length=2142
Score = 2739 bits (1483), Expect = 0.0
Identities = 1684/1778 (95%), Gaps = 26/1778 (1%)
Strand=Plus/Plus
Query 284 ttttattgtcaagatttttaatttaggtttCCT---GGAGGAGATCACAGATCTTCTTTT 340
|||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 383 TTTT-TTGTCAAGATTTTTAATTTAAGTTTCCTGGAGGAGGAGATCACAGATCTTCTTTT 441
Query 341 CATATGAAGAGATCTTTCCTTCTCTTGTATGTGCTCCTGGTACAGTCCTTCTATGGTGCT 400
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 442 CATATGAAGAGATCTTTCCTTCTCTTGTATGTGCTCCTGGTACAGGCCTTCTATGGGGCT 501
Query 401 TGGTGTAGTGTAGGAGGAAGCCTGCATTGTGAATATTCCAGTTTAGCGAGTCTTCACCGG 460
||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 502 TGGTGTAGTGTTGGAGAAAGCCTGCATTGTGAATATTCCAATTTAGCGAGTCTTCACCGG 561
Query 461 CCTCACAGTGTATCGATTACAGAGTTTGGAGCGGTTGGAGATGGTGTGACTCTAAATACT 520
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 562 CCTCACAGCGTATCGATTACAGAGTTTGGAGCGGTTGGAGATGGTGTGACTCTAAACACT 621
Query 521 AAAGCCTTTCAGAATGCTTTGTTCTACCTCAATTCTTTCTCTGACAAAGGCGGTGCCAAG 580
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 622 AAAGCCTTTCAGAATGCTCTGTTCTACCTCAATTCTTTCTCTGATAAAGGCGGGGCCAAG 681
Query 581 CTTTTTGTTCCTGCTGGTCAGTGGCTTACCGGGAGTTTCGACCTCATCAGTCACCTCACC 640
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 682 CTTTTTGTTCCCGCTGGTCAGTGGCTTACCGGGAGTTTCGACCTTATCAGTCACCTCACC 741
Query 641 TTATGGCTAGACAAAGGTGCAACGATTCTCGGGTCAACGAGCTCAGAGAATTGGCCTGTG 700
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 742 TTATGGCTAGATAAAGGTGCAACGATTCTCGGGTCAACGAGCTCAGAGAATTGGCCCGTG 801
Query 701 GTTGATCCATTACCATCATATGGACGAGGAAGAGAATTGCCCGGTAGAAGACACAGAAGT 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GTTGATCCATTACCATCATATGGACGAGGAAGAGAATTGCCCGGTAGAAGACACAGAAGT 861
Query 761 CTTATATATGGTCAAAATCTCACAGATGTAGTCATAACAGGCGAGAACGGGACAATTGAT 820
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CTTATATATGGTCAGAATCTCACAGATGTAGTCATAACAGGCGAGAACGGGACAATTGAT 921
Query 821 GGTCAAGGAAGTGTATGGTGGGATTGGTTTAGAAATGGAGAGCTAAACTATACAAGACCT 880
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 922 GGTCAAGGAACTGTATGGTGGGATTGGTTTAGAAATGGAGAGCTTAACTATACAAGACCT 981
Query 881 CATCTTGTTGAGCTCATGAACTCTACTGGTCTGATCATCTCCAACCTCACATTCTTGAAT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CATCTTGTTGAGCTCATGAACTCTACTGGTCTGATCATCTCCAACCTCACATTCTTGAAT 1041
Query 941 TCACCGTTTTGGAACATTCATCCTGTTTATTGCAGAGATGTTGTTGTGAAGAATCTCACA 1000
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1042 TCACCGTTTTGGAACATTCATCCTGTTTATTGCAGAGATGTTGTTGTAAAGAATCTCACA 1101
Query 1001 ATTTTGGCTCCTCTTGAATCTCCAAATACAGATGGAGTTGATCCAGACTCATCAACTAAT 1060
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1102 ATTTTGGCTCCTCTTGAATCTCCAAATACAGATGGAGTTGATCCAGATTCATCAACTAAT 1161
Query 1061 GTTTGCATAGAGGATTGTTACATAGTTACCGGAGATGATTTGGTATCGATAAAAAGCGGA 1120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1162 GTTTGCATAGAGGATTGTTACATAGTTACCGGGGATGATTTGGTATCGATAAAAAGCGGA 1221
Query 1121 TGGGATGAGTACGGAATATCCTACGCAAGACCGAGCTCCAAGATCAAGATCAATCGGTTA 1180
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1222 TGGGATGAGTATGGAATATCCTACGCAAGACCGAGCTCCAAGATCAAGATTAATCGGTTA 1281
Query 1181 ACAGGTCAAACTACTTCAAGCTCAGGCATAGCAATCGGAAGTGAAATGTCAGGAGGTGTG 1240
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1282 ACAGGTCAAACTACTTCAAGCTCAGGAATAGCAATAGGAAGTGAAATGTCGGGAGGTGTA 1341
Query 1241 TCCGAAATATATATTAAAGACTTACATTTATTCAATTCAAATACCGGAATCAGAATCAAG 1300
||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1342 TCCGAAATATACATTAAAGACTTACATTTGTTCAATTCGAATACTGGAATCAGAATCAAG 1401
Query 1301 ACTTCTCCGGGAAGAGGCGGGTATGTTAGAAACGTTCACATCTTGAACGTGAAGCTCGAT 1360
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 ACTTCTGCTGGAAGAGGCGGGTATGTTAGAAACGTTCACATCTTGAACGTGAAGCTCGAT 1461
Query 1361 AATGTAAAGAAAGCGATTAGATTCACGGGTAAGTACGGTGAACATCCTGATGAAAAATAT 1420
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1462 AATGTAAAGAAAGCGATTAGGTTCACCGGTAAGTACGGTGAACATCCTGATGAGAAATAC 1521
Query 1421 GATCCCAAAGCACTCCCAGCTATCGAGAAAATCACCTTTGAGAATGTAAATGGTGATGGA 1480
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1522 GATCCCAAAGCACTCCCAGCTATAGAGAAAATCACCTTTGAGAATGTAAATGGCGATGGA 1581
Query 1481 ATCGGTGTTGCGGGTCTACTTGAAGGTATAGCAGGAGATGAGTTTAGGAATATATGTTTC 1540
|| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1582 ATAGGTGTTGCGGGTCTTCTTGAAGGTATAGAAGGAGATGTGTTTAAGAATATATGTTTC 1641
Query 1541 CTTAATGTTACTCTTAGAGTGAAGAAGAATTCGAAGAAATCTCCATGGGAATGCTCAAAT 1600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1642 CTTAATGTTACTCTTAGAGTGAAGAAGAATTCGAAGAAATCACCATGGGAATGCTCGAAT 1701
Query 1601 GTTAGAGGTTATTCACAGTGGGTTTCGCCGGAAATTACTTGTGATTCTTTGAAAGAGAGT 1660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 GTGAGAGGTTATTCACAGTGGGTTTCGCCGGAAATTACTTGTGATTCTTTGAAAGAGAGT 1761
Query 1661 ATATTCCCGGAACATCAATCTGATTGTTTTGGGTTATCGGAAAATAATCTGGATATATCA 1720
||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 1762 ATATTCCCGGAACATGGATCTGATTGTTTCGGGTTATCGGAAAATAATATGGAGATATCA 1821
Query 1721 AGTGGTTTAAGTAGATCACCATGGTTACTTTCTTGGTAAGTTACGGTGAAGTTTTGAACA 1780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1822 AGTGGTTTAAGTAGATCACCATGGTTACTTTCTTGGTAAGTTACTGTGAAGTTTTGAACA 1881
Query 1781 TGGAAGGGGAAACAACAGTTTGCTTGATTGC-GAAGAAACCTCTTCGATTTTCAAAAGTG 1839
| ||||||||||| |||||||||||||| | |||||||||||||||||||| |||| ||
Sbjct 1882 TCAAAGGGGAAACA-CAGTTTGCTTGATT-CTGAAGAAACCTCTTCGATTTTGAAAAATG 1939
Query 1840 ATGCTTTCTTTCATTTTTTGTTGTTTTCTTGTAAATTTGTGTGCAGTGAGGGCAATAATC 1899
|||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1940 ATGCTTTCTTTCATCTTTTGTTGTTTTCGTGTAAATTTGTGTGCAGTGAGGAAAATAATC 1999
Query 1900 AGAGTGGCTTAAGAGtttctttttccttcgttttgtttttccattttcttgtatgggctt 1959
|||||||||||||||||| || || || | ||||| || || ||||||||||
Sbjct 2000 AGAGTGGCTTAAGAGTTT-TTGTT--TT--T---GTTTT-CC-TT-----GTATGGGCTT 2044
Query 1960 tttaatgcttt-GGTGAGCGGAACAAGTGTAATATCTCCGACGACAGTCTTTTGAAATTT 2018
| |||||||| |||||||||||||| ||||||||||||||| | ||||| |||||||||
Sbjct 2045 T--AATGCTTTTGGTGAGCGGAACAATTGTAATATCTCCGAC-AGAGTCTGTTGAAATTT 2101
Query 2019 TTTGACAATTATTTTTCAATCTCAAAGTCCATAACTAG 2056
|||||||||||||||||||| ||| | |||||||||||
Sbjct 2102 TTTGACAATTATTTTTCAATTTCAGATTCCATAACTAG 2139
Score = 357 bits (193), Expect = 2e-97
Identities = 273/306 (89%), Gaps = 28/306 (9%)
Strand=Plus/Plus
Query 1 TCTCTGGGTTTCTCTCAGTGACCATCTTTGTCTCTTTGTAACAGAACATCAAATAA-GAC 59
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 29 TCTCTGGGTTTCTCTCAGTGACCCTCTTTGTCTCTTTGTAACAGAACATCAAATAAGGA- 87
Query 60 GAGAAGGATATT-AAAAA-TGGTAATGGCGAATTGGCGATGATGGGTACGGAGAAGGTAG 117
| ||| |||||| ||||| ||||||||||| | | ||| |||||||||||||||||||
Sbjct 88 G-GAA-GATATTAAAAAATTGGTAATGGCG-A-T---GATCATGGGTACGGAGAAGGTAG 140
Query 118 AAGATGGACCTACTGCTTGAAATTTGGCGGGGGCAGAAACGGTCTCTTTCAATGATTTTT 177
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 141 AAGATGGACCTACTGCTTGAATTTTGGCGGG--CAGAAACGGTCTCTTTCAATGATTTTT 198
Query 178 ATGTCCATTGTGGGTTCCCCAGTTTCCTCTCACCACTGACCCATCTA-TCACTCTTTGCA 236
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 199 ATGTCCATTGTGGGTTCCCCAGTTTCCTCTCACCACTGACCCATCTAATCAATCTTTGCA 258
Query 237 ACTTGC--C-AC-ATCCAT--------GAGAGAGAa-tttttc-tgattcaaagttttga 282
|||||| | || |||||| ||||||||| ||||| ||||||||||||||||
Sbjct 259 ACTTGCTACTACTATCCATCCATCCATGAGAGAGAAATTTTTTGTGATTCAAAGTTTTGA 318
Query 283 ttttta 288
||||||
Sbjct 319 TTTTTA 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101907106350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5