BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486723
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 3... 1116 0.0
AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 2... 412 2e-114
> AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible
30 | chr3:22995791-22996761 FORWARD LENGTH=731
Length=731
Score = 1116 bits (604), Expect = 0.0
Identities = 698/740 (94%), Gaps = 19/740 (3%)
Strand=Plus/Plus
Query 1 ATAAAATCATagagagagagagaATAGT---A-AAAT--aaaaaaaTGGGAAGAGGGAGA 54
||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||
Sbjct 1 ATAAAATCATAGAGAGAGAGA-AATAGTAAAAGAAATAAAAAAAAATGGGAAGAGGGAGA 59
Query 55 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTCTCTTCG 114
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTGTCTTCG 119
Query 115 AGTAATACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCAGCTTCGGATCATCTTCC 174
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 120 AGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAGCTTCGGATCATCTTCC 179
Query 175 GGACAATACTACAACGGTGGAGAAAACCATGAGTATGATGGAGTCGGTGCGGCAGAGGAA 234
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 180 GGACAATATTACAACGGTGGAGATAACCATGAATATGATGGAGTCGGTGCGGCAGAGGAA 239
Query 235 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 294
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299
Query 295 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 354
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359
Query 355 TATCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTTGGGCTGAA 414
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTTGGGCTGAA 419
Query 415 GAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 474
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 479
Query 475 TGGATGATGGTTGGAGATGTTCCATGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 539
Query 535 ATCTCAAGAGCTTATCACTACTGAATGtttttttAAAAAGCAGAGGTGGAAGACTCTAGG 594
|||||||||||||||||||||||| | ||| | |||| ||| | ||||||| ||||||
Sbjct 540 ATCTCAAGAGCTTATCACTACTGA-T-TTTCT--AAAA-GCAAACTTGGAAGAATCTAGG 594
Query 595 ATTGACCAATACAGTCAGTGGTGGaaaa--aaaaaGTTAGTTTTGTCTGAATGTAAATCA 652
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 ATTGACCAATACAGTCAGTGGTGGTGGGGGAAAAAGTTAGTTTTGTCTGAATGTAAATCA 654
Query 653 CTTGTTCGAGATTTTTATTCAAATTTTGTTTCTAGTTTAATTTATTACTTTTATAACAAA 712
||||||||||||||| |||||||||||||||||||||| | ||||| ||||||| |||
Sbjct 655 CTTGTTCGAGATTTT-ATTCAAATTTTGTTTCTAGTTT--T--ATTACATTTATAAAAAA 709
Query 713 ATCGGTTGTAACTTGTAATG 732
||||||||||||||||||||
Sbjct 710 ATCGGTTGTAACTTGTAATG 729
> AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible
20 | chr2:19307855-19308990 FORWARD LENGTH=655
Length=655
Score = 412 bits (223), Expect = 2e-114
Identities = 443/543 (82%), Gaps = 39/543 (7%)
Strand=Plus/Plus
Query 40 ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCA 99
||||||||||||||||| ||||||||||| || |||||||| ||| |||| |||||||||
Sbjct 7 ATGGGAAGAGGGAGAAGTTCATCGTCTTCTTCAATAGAGAGTAGCAGCAAGAGCAACCCA 66
Query 100 TTTGGTGTCTCTTCGAGT-AA-TACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCA 157
|| |||| |||| || || |||||| ||||||||||||||||| || ||||| ||||
Sbjct 67 TTCGGTG---CTTC--GTCAAGTACTCGAAACCTAAGCACGGACCTGAGACTCGGACTCA 121
Query 158 GCTTC-GGATCATCTTC-CGGA--CAATACTACAACGGTGGAGAAAACCATGAGTA-T-- 210
||||| ||| |||| || ||| ||||| | ||||||| | | | ||| ||| |
Sbjct 122 GCTTCGGGA-CATCCTCAGGGACTCAATATTTCAACGGT-G-G----CTATGGGTACTCC 174
Query 211 GATGGAG-T----CGGT-GCGGCA-GAGGAA-ATGAT-G-ATC-ATGGAAGAAGAAGATC 259
| || || | |||| | || | | |||| ||| | | | |||| || |||||
Sbjct 175 GTTGCAGCTCCGGCGGTAGAGG-ATGCGGAATATG-TGGCGGCTGTGGAGGAGGAAGAAG 232
Query 260 AAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTA 319
| || |||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct 233 AGAATGAGTGTAACAGTGTAGGGAGCTTTTACGTGAAAGTGAACATGGAAGGAGTTCCAA 292
Query 320 TTGGAAGAAAGATCGATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTTG 379
||||||||||||||||||| | ||||||||||| || | || ||||||| ||| ||||
Sbjct 293 TTGGAAGAAAGATCGATCTAATGTCTCTTAATGGCTACCGCGACTTGATCAGAACCCTTG 352
Query 380 ACTACATGTTCAATGCCTCAATCCTTTGGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGA 439
| | ||||||||| || || || || ||||||||||||||||| ||||| | ||||||||
Sbjct 353 ATTTCATGTTCAACGCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAATGAGAAGA 412
Query 440 GTCACGTGCTAACGTACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCAT 499
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 413 GTCACGTGCTAACGTACGCAGATAAGGAAGGTGACTGGATGATGGTTGGAGATGTTCCTT 472
Query 500 GGGAGATGTTCTTGTCTAGC-GTGAGAAGACTAAAGATCTCAAGAGCTTAT--C-ACTAC 555
|||||||||||||||||| | ||||||||||| ||||| ||||||||| || | |||||
Sbjct 473 GGGAGATGTTCTTGTCTA-CTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTAC 531
Query 556 TGA 558
|||
Sbjct 532 TGA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5