BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486723 Length=732 Score E Sequences producing significant alignments: (Bits) Value AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 3... 1116 0.0 AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 2... 412 2e-114 > AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 30 | chr3:22995791-22996761 FORWARD LENGTH=731 Length=731 Score = 1116 bits (604), Expect = 0.0 Identities = 698/740 (94%), Gaps = 19/740 (3%) Strand=Plus/Plus Query 1 ATAAAATCATagagagagagagaATAGT---A-AAAT--aaaaaaaTGGGAAGAGGGAGA 54 ||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||| Sbjct 1 ATAAAATCATAGAGAGAGAGA-AATAGTAAAAGAAATAAAAAAAAATGGGAAGAGGGAGA 59 Query 55 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTCTCTTCG 114 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 60 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTGTCTTCG 119 Query 115 AGTAATACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCAGCTTCGGATCATCTTCC 174 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 120 AGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAGCTTCGGATCATCTTCC 179 Query 175 GGACAATACTACAACGGTGGAGAAAACCATGAGTATGATGGAGTCGGTGCGGCAGAGGAA 234 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 180 GGACAATATTACAACGGTGGAGATAACCATGAATATGATGGAGTCGGTGCGGCAGAGGAA 239 Query 235 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 294 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299 Query 295 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 354 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359 Query 355 TATCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTTGGGCTGAA 414 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTTGGGCTGAA 419 Query 415 GAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 474 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 479 Query 475 TGGATGATGGTTGGAGATGTTCCATGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 534 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 480 TGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 539 Query 535 ATCTCAAGAGCTTATCACTACTGAATGtttttttAAAAAGCAGAGGTGGAAGACTCTAGG 594 |||||||||||||||||||||||| | ||| | |||| ||| | ||||||| |||||| Sbjct 540 ATCTCAAGAGCTTATCACTACTGA-T-TTTCT--AAAA-GCAAACTTGGAAGAATCTAGG 594 Query 595 ATTGACCAATACAGTCAGTGGTGGaaaa--aaaaaGTTAGTTTTGTCTGAATGTAAATCA 652 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 595 ATTGACCAATACAGTCAGTGGTGGTGGGGGAAAAAGTTAGTTTTGTCTGAATGTAAATCA 654 Query 653 CTTGTTCGAGATTTTTATTCAAATTTTGTTTCTAGTTTAATTTATTACTTTTATAACAAA 712 ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||| ||| Sbjct 655 CTTGTTCGAGATTTT-ATTCAAATTTTGTTTCTAGTTT--T--ATTACATTTATAAAAAA 709 Query 713 ATCGGTTGTAACTTGTAATG 732 |||||||||||||||||||| Sbjct 710 ATCGGTTGTAACTTGTAATG 729 > AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 20 | chr2:19307855-19308990 FORWARD LENGTH=655 Length=655 Score = 412 bits (223), Expect = 2e-114 Identities = 443/543 (82%), Gaps = 39/543 (7%) Strand=Plus/Plus Query 40 ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCA 99 ||||||||||||||||| ||||||||||| || |||||||| ||| |||| ||||||||| Sbjct 7 ATGGGAAGAGGGAGAAGTTCATCGTCTTCTTCAATAGAGAGTAGCAGCAAGAGCAACCCA 66 Query 100 TTTGGTGTCTCTTCGAGT-AA-TACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCA 157 || |||| |||| || || |||||| ||||||||||||||||| || ||||| |||| Sbjct 67 TTCGGTG---CTTC--GTCAAGTACTCGAAACCTAAGCACGGACCTGAGACTCGGACTCA 121 Query 158 GCTTC-GGATCATCTTC-CGGA--CAATACTACAACGGTGGAGAAAACCATGAGTA-T-- 210 ||||| ||| |||| || ||| ||||| | ||||||| | | | ||| ||| | Sbjct 122 GCTTCGGGA-CATCCTCAGGGACTCAATATTTCAACGGT-G-G----CTATGGGTACTCC 174 Query 211 GATGGAG-T----CGGT-GCGGCA-GAGGAA-ATGAT-G-ATC-ATGGAAGAAGAAGATC 259 | || || | |||| | || | | |||| ||| | | | |||| || ||||| Sbjct 175 GTTGCAGCTCCGGCGGTAGAGG-ATGCGGAATATG-TGGCGGCTGTGGAGGAGGAAGAAG 232 Query 260 AAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTA 319 | || |||||||| ||||| || ||||| ||||||||||||||||||||||||||||| | Sbjct 233 AGAATGAGTGTAACAGTGTAGGGAGCTTTTACGTGAAAGTGAACATGGAAGGAGTTCCAA 292 Query 320 TTGGAAGAAAGATCGATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTTG 379 ||||||||||||||||||| | ||||||||||| || | || ||||||| ||| |||| Sbjct 293 TTGGAAGAAAGATCGATCTAATGTCTCTTAATGGCTACCGCGACTTGATCAGAACCCTTG 352 Query 380 ACTACATGTTCAATGCCTCAATCCTTTGGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGA 439 | | ||||||||| || || || || ||||||||||||||||| ||||| | |||||||| Sbjct 353 ATTTCATGTTCAACGCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAATGAGAAGA 412 Query 440 GTCACGTGCTAACGTACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCAT 499 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 413 GTCACGTGCTAACGTACGCAGATAAGGAAGGTGACTGGATGATGGTTGGAGATGTTCCTT 472 Query 500 GGGAGATGTTCTTGTCTAGC-GTGAGAAGACTAAAGATCTCAAGAGCTTAT--C-ACTAC 555 |||||||||||||||||| | ||||||||||| ||||| ||||||||| || | ||||| Sbjct 473 GGGAGATGTTCTTGTCTA-CTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTAC 531 Query 556 TGA 558 ||| Sbjct 532 TGA 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35515541929 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5