BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486726
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62170.1 | Symbols: VGDH2 | VANGUARD 1 homolog 2 | chr3:2301... 3328 0.0
> AT3G62170.1 | Symbols: VGDH2 | VANGUARD 1 homolog 2 | chr3:23016223-23018509
REVERSE LENGTH=2211
Length=2211
Score = 3328 bits (1802), Expect = 0.0
Identities = 2065/2183 (95%), Gaps = 54/2183 (2%)
Strand=Plus/Plus
Query 1 ACCAGCCCCATTAATAAACCACCGGGCTCTGTTTTAATaaaaaaaaTCCCCTCCCTCTCC 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ACCAGCCCCATTAATAAACCACCGGGCTCTGTTTCAATAAAAAAAATCCCCTCCCTCTCA 60
Query 61 TATTTACCTCCCGAATAAAACCGGAGGGAGAG--aaaa-a-aaaaatc-----aaaagg- 110
|||||||||||||||||||||||||||||||| |||| | ||||| | ||||||
Sbjct 61 TATTTACCTCCCGAATAAAACCGGAGGGAGAGAAAAAACATAAAAAGCAAAAAAAAAGGT 120
Query 111 --------gaa----aaaaat-tat-a-aa-aaccaaaaaaa-tttgaaaaaaTGGCAGT 153
|| |||||| ||| | || || ||||||| || ||||||||||||||
Sbjct 121 AAAATCAAAAAGGGGAAAAATATATAACAACAAAAAAAAAAAGTTAGAAAAAATGGCAGT 180
Query 154 AGGTAAA-GTTGTGATATCTGTGGCATCACTCCTCCTAGTGGTGGGTGTTGCCATAGGAG 212
||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGG-AAAGGTTGTGGTATCTGTGGCATCACTCCTCCTAGTGGTGGGTGTTGCCATAGGAG 239
Query 213 TGATCACGTAT-GTTAATAAAGGAGGCGGCGCCAACGGCGACAGTAATGCTCCCATAAAC 271
| ||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 240 TTATCACGT-TCGTTAATAAAGGAGGCGGCGCCAATGGCGACAGTAATGGTCCCATAAAC 298
Query 272 TCTCATCAGAAAGCGGTTCAGACAATTTGTCAGTCAACCACAGACCAAGGTTCGTGCGCG 331
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 299 TCTCATCAGAAAGCGGTTCAGACAATTTGCCAGTCAACCACAGACCAAGGTTCGTGCGCG 358
Query 332 AAAACACTCGAGCCAGTCAAAAGTGATGATCCAAGCAAGCTTGTCAAAGCCTTCCTGATG 391
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAAACACTCGACCCAGTCAAAAGTGATGATCCAAGCAAGCTTGTCAAAGCCTTCCTGATG 418
Query 392 GCTACTAAAGACGCGATCACAAAATCCTCAAACTTCACGGCTTCGACCGAAGGAGGCATG 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 GCTACTAAAGACGCGATCACAAAATCCTCAAACTTCACGGCTTCGACCGAAGGAGGTATG 478
Query 452 GGGACTAACATGAACGCGACGAGCAAAGCCGTTCTGGATTACTGCAAGAAAGTATTGACT 511
|| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
Sbjct 479 GGTACTAACATGAACGCGACCAGCAAAGCCGTTCTTGATTACTGCAAGAGAGTATTGA-T 537
Query 512 -TACGCTCTTGAGGATCTTGAGACCATAGTTGAAGAAATGGGTGAAGATCTTCAGCAGAG 570
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 538 GTACGCTCTTGAGGATCTTGAGACCATTGTTGAAGAGATGGGTGAGGATCTTCAGCAGAG 597
Query 571 TGGAACTAAGCTTGACCAGCTTAAACAATGGTTAACCGGAGTTTTCAACTACCAAACCGA 630
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 598 TGGAACTAAGCTTGACCAGCTCAAACAATGGTTAACTGGAGTTTTCAACTACCAAACCGA 657
Query 631 TTGTCTTGATGATATCGAGGAAGTTGAGCTAAAGAAGATCATGGGTGAAGGAATCTCTAA 690
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGTCTTGACGACATCGAGGAAGTTGAGCTAAAGAAGATCATGGGTGAAGGAATCTCTAA 717
Query 691 CTCCAAGGTTTTGACCAGTAACGCTATCGATATCTTCCATTCCGTTGTTACCGCGATGGC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCCAAGGTTTTGACCAGTAACGCTATCGATATCTTCCATTCCGTTGTTACCGCGATGGC 777
Query 751 CCAAATGGGTGTCAAAGTCGACGATATGAAGAACATAAGCATCGGAGCCGGAGCCAGCGG 810
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||
Sbjct 778 CCAAATGGGTGTCAAAGTCGACGATATGAAGAACATAACCATGGGAGCCGGAGCCGGTGG 837
Query 811 AGCCCCTGCACGTCGCCTTCTTGAAGACACCGACGCTAAGGGACTCCCCAAATGGTTTTC 870
|| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 838 AG---CTGCACGTCGCCTTCTTGAAGACAACGACTCTAAGGGACTCCCCAAATGGTTTTC 894
Query 871 TGGTAAAGACAGGAAGCTTATGGCTAAGGCCGGACGTGGCGCTCCAGCTGGCGGTGCAGG 930
||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 895 TGGTAAAGACAGGAAGCTTATGGCTAAGGCCGGACGTGGCGCTCCAGCT----G-GC--- 946
Query 931 TGGTGATGATGGTATCGGTGAAGGCGGTGGTGGTGGCGGTAAGATCAAGGCTACTCATGT 990
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 947 -GGTGATGATGGTATCGGTGAAGGCGGTGGTGGTGGCGGTAAGATCAAGGCGACTCATGT 1005
Query 991 AGTGGCTAAGGATGGAAGTGGACAGTTTAAGACCATTTCTCAGGCGGTTATGGCTTGCCC 1050
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1006 AGTGGCTAAGGATGGAAGTGGACAGTTTAAGACCATTTCTGAGGCGGTTATGGCTTGCCC 1065
Query 1051 GGATAAAAACCCTGGAAGGTGCATTATCCATATCAAGGCTGGTATCTACAATGAACAAGT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGATAAAAACCCTGGAAGGTGCATTATCCATATCAAGGCTGGTATCTACAATGAACAAGT 1125
Query 1111 CACTATCCCTAAGAAGAAGAACAACATTTTCATGTTCGGTGATGGTGCTACACAAACCAT 1170
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CAGAATCCCTAAGAAGAAGAACAACATTTTCATGTTCGGTGATGGTGCTACACAAACCAT 1185
Query 1171 CATTACCTTTAACAGAAGTGTTAAACTTAGCCCAGGAACCACCACTTCACTCAGTGGCAC 1230
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1186 CATTACCTTTGACAGAAGTGTTAAACTTAGCCCAGGAACCACTACTTCACTCAGTGGCAC 1245
Query 1231 CGTTCAGGTTGAATCTGAGGGATTCATGGCGAAATGGATCGGGTTTAAGAACACTGCTGG 1290
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1246 CGTTCAGGTCGAATCTGAGGGATTCATGGCGAAATGGATTGGGTTTAAGAACACTGCTGG 1305
Query 1291 TCCATTGGGACACCAAGCGGTCGCACTCCGTGTGAACGGAGACCGTGCGGTCATATTCAA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TCCATTGGGACACCAAGCGGTCGCACTCCGTGTGAACGGAGACCGTGCGGTCATATTCAA 1365
Query 1351 CTGTAGATTCGACGGTTACCAAGACACTCTCTACGTCAACAACGGACGTCAGTTCTACAG 1410
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1366 CTGTAGATTCGACGGTTACCAAGACACACTCTACGTCAACAACGGACGTCAATTCTACAG 1425
Query 1411 GAACATTGTTGTATCCGGTACAGTGGATTTCATCTTCGGAAAATCCGCCACTGTGATCCA 1470
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1426 GAACATTGTTGTATCCGGTACAGTGGATTTCATCTTCGGAAAATCCGCAACTGTGATCCA 1485
Query 1471 AAACTCTCTAATCCTCGTCCGAAAGGGCAGCCCCGGACAATCCAACTACGTTACAGCTGA 1530
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1486 AAACTCTCTCATCCTCGTCCGAAAGGGAAGCCCCGGACAATCCAACTACGTTACGGCTGA 1545
Query 1531 CGGTAATGAAAAGGGTGCAGCGATGAAGATCGGTATCGTTCTCCATAACTGCCGTATCAT 1590
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1546 CGGTAATGAAAAGGGTGCAGCGATGAAGATCGGTATCGTCCTCCATAACTGCCGTATCAT 1605
Query 1591 ACCAGACAAGGAGCTCGAAGCTGACAAGCTAACCATCAAATCGTTCCTAGGAAGGCCGTG 1650
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1606 ACCGGACAAGGAGCTCGAAGCTGACAAGCTAACCATCAAATCGTACCTAGGAAGGCCGTG 1665
Query 1651 GAAGAAATTTGCCACGACTGTGATTATTGGAACTGAGATTGGTGATTTGATTAAACCAGA 1710
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 GAAGAAGTTTGCCACGACTGTGATTATTGGAACTGAGATTGGTGATTTGATTAAACCAGA 1725
Query 1711 AGGATGGACCGAATGGCAAGGAGAACAAAACCACAAGACTGCTAAATACATTGAGTTCAA 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 AGGATGGACCGAATGGCAAGGAGAACAAAACCACAAGACTGCTAAATACATTGAGTTCAA 1785
Query 1771 TAACCGTGGACCGGGAGCTGCCACTACTCAGAGGCCTCCTTGGGTTAAGGTGGCTAAGTC 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 TAACCGTGGACCGGGAGCTGCCACTACTCAGAGGCCTCCTTGGGTTAAGGTGGCTAAGTC 1845
Query 1831 TGCGGCTGAGGTTGAAGCTTACACCGTGGCTAACTGGGTTGGTCCAGCTAATTGGATCCA 1890
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1846 TGCGGCTGAGGTTGAAACTTACACCGTGGCTAACTGGGTTGGTCCAGCTAACTGGATCCA 1905
Query 1891 AGAAGCCAACGTGCCCGTCCAGCTAGGATTGTAAGAAAACAACAACAACaaaaaaaaGTA 1950
||||||||||||||||||||| |||||||||||||| |||||| ||| |||| ||
Sbjct 1906 AGAAGCCAACGTGCCCGTCCAACTAGGATTGTAAGAGGACAACA-CAA-AAAA----GTT 1959
Query 1951 AAGAATAAAACAGTATGTGATAATGATAAGGTAACGATACGACGTCGTCTCTAGGGATCA 2010
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1960 AAGAATAAAACAGTATGTGATAATGTTAAGGTAACGATACGACGTCGTCTCTGGGGATCA 2019
Query 2011 GAACTCTTTTTTGGGTACTAAATACAAAGATAGGGTTCTAGACGTGTTGAGATGAAGTTT 2070
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2020 GAACTCTTTTTTGGATACTATATACAAAGATAGGGTTCTAGACGTGTTGAGATGATGTTT 2079
Query 2071 GTATAAGATTGCTTTTGTTTCACGTGCAAATGAGGaaaaaaaaaTGTTTTGTTTCAtttt 2130
||||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 2080 GTATAAGATTGCTTTCGTTTCACGTGCAAAAGAGGAAAAAAAATTGTTTTGTT--ATTTT 2137
Query 2131 tttttGTATTACAAATAATTAAT 2153
|||| ||| ||||||||||||||
Sbjct 2138 TTTT-GTAGTACAAATAATTAAT 2159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108684179925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5