BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486728
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62200.1 | Symbols: | Putative endonuclease or glycosyl hyd... 3088 0.0
AT1G76911.1 | Symbols: | Pseudogene of AT3G62200 | chr1:288872... 575 6e-163
AT3G62210.1 | Symbols: EDA32 | Putative endonuclease or glycosy... 536 3e-151
AT1G76910.1 | Symbols: | unknown protein; Has 0 Blast hits to ... 117 5e-25
> AT3G62200.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr3:23023437-23025732 REVERSE LENGTH=2083
Length=2083
Score = 3088 bits (1672), Expect = 0.0
Identities = 1958/2094 (94%), Gaps = 28/2094 (1%)
Strand=Plus/Plus
Query 1 CCCTTATTCGAAGATTCCTCTGGCGATTCG-A--AGTAGCTTACGGCGGCGGAAGAACGA 57
||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |||
Sbjct 3 CCCTTATTCGAAGATTCCTTTGGCGATTCGTAGTAGTAGCTTACGGCGGCGGAAGATCGA 62
Query 58 TGTCGACAAACACGACGAGCGATGGGGATTTCGGAACGGCTTCAGTGGCGGCGGAGATGG 117
||||||| ||| || |||| ||||||||||||||||| ||| ||| |||| |||||||
Sbjct 63 TGTCGACGAACTCGGCGAGTGATGGGGATTTCGGAACTAATTCGGTGCCGGCAGAGATGG 122
Query 118 CTGAGGCTCAGTACGTGAGGGCGAAGACTTCAGTGTGGTGGGATATAGAGAATTGTCAAG 177
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 123 CTGAGGCTCAGTACGTGAGAGCGAAGACTTCAGTGTGGTGGGACATAGAGAATTGCCAAG 182
Query 178 TCCCAAAAGGTCTTGACGCTCATGGAATTGCTCAGAATATTACTTCTGCGCTTCAGAAGA 237
|||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 183 TCCCTAACGGTCTTGATGCTCATGGAATTGCTCAGAATATCACTTCGGCGCTTCAGAAGA 242
Query 238 TGAACTATTGTGGTCCTGTTTCTATCTCTGCTTATGGTGATACCAATCGCATCCCTTTGT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGAACTATTGTGGTCCTGTTTCTATCTCTGCTTATGGTGATACCAATCGCATCCCTTTGA 302
Query 298 CGATCCAACACGCTCTTAATTCCACCGGAATTGCGCTCAACCACGTCCCTGCCGGCGTGA 357
| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 303 CCATTCAACATGCTCTTAATTCCACCGGAATTGCGCTCAACCACGTCCCCGCCGGGGTGA 362
Query 358 AAGATGCGAGTGATAAGAAGAT-CTTAGTGGACATGTTGTTTTGGGCGTTGGACAATCCT 416
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 363 AAGATGCGAGTGATAAGAAGATACT-AGTGGACATGTTGTTTTGGGCGTTAGACAATCCT 421
Query 417 GCGCCTGCAAATTTTATGTTAATATCAGGAGATAGAGACTTTTCCAATGCTCTTCACGGA 476
|| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 422 GCACCTGCGAATTTTATGTTAATATCAGGAGACAGAGACTTCTCCAATGCTCTTCACGGA 481
Query 477 TTGAGAATGAGACGTTACAATGTTCTATTGGCACAGCCTCTCAAAGCATCTGTGCCACTT 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 482 TTGAGAATGAGACGTTACAATGTTCTTTTGGCACAGCCTCTCAAAGCATCTGTGCCACTT 541
Query 537 GTTCATGCTGCAAAGACTGTGTGGCTTTGGACAAGCCTATCTGCTGGAGGAATCCCTCTT 596
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 542 GTTCATGCTGCAAAGACTGTGTGGCTTTGGACTAGCCTATCTGCTGGTGGAATCCCTCTT 601
Query 597 ACACGAGCCGAAAGCTTACAACTTGTTGCCAACCAGACGACCCCAACATC-TGGTTCAGA 655
||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||||
Sbjct 602 ACACGAGCCGAAAGCTTACAACTTGTTGCCAACCAAACGACCCCAA-AGCCTGGTTCAGA 660
Query 656 GATTCCATCAAGCCAACCTCTGGATTCAAATTTTGACTCCAGGAGAGTCTTTGACAACAA 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GATTCCATCAAGCCAACCTCTGGATTCAAATTCTGACTCCAGGAGAGTCTTTGACAACAA 720
Query 716 ACCCAAGGTGAAATACCTTCCAAAACAATCAAATCATCAGCCTAACAATAACTACCGTCA 775
| |||| || ||||| ||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 721 ATCCAAAGTCAAATATGTTCCAAAACCATCTAATCATCAGCCTAACAATAATTACCGTCA 780
Query 776 GCAACA---GAACACTCAAGGGAAACAGTTTAAGAAAGCCCCACATGAGTTCTTTGGCAG 832
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAACAACAGAATACTCAAGGGAAACAGTTTAAGAAAGCCCCACATGAGTTCTTTGGCAC 840
Query 833 TAGCGAGCCATCTGTTTCCACTAGCAGACCTCCTCC-C--AATTTACCCTCTAGCAATGT 889
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 841 TAGCGAGCCATCTGTTTCCACTAGCAGACCTCCTCCTCCCAATTTACCCTCTAGCAATGT 900
Query 890 TAACACTTTCCCTGGTAATGTGATGACTAATCCTCAGAATCAGAATCAGTACAATTATCC 949
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 901 TAACACTTTCCCTGGTAATGTCATGACTAATCCTCAGAATCAGAATCAGTACACTTATCC 960
Query 950 TCCTCGACCTGGTCCTTTCCCTCCCAGACAACCTTACCCTAACCCTGATCCATCTTGGAA 1009
|||||| |||||||| |||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 961 TCCTCGCCCTGGTCCATTCCCTCCTAGACAACCTTACCCTAACACTGATCCTTCTTGGAA 1020
Query 1010 TAATGGAAATAGCATCCCAAATCATGCTCAGAACTATTATCCCAATGCTGGC-AGACCAG 1068
||||||||| ||||||||||| |||||||||||||||||||||||||||| | || ||||
Sbjct 1021 TAATGGAAACAGCATCCCAAACCATGCTCAGAACTATTATCCCAATGCTG-CTAGGCCAG 1079
Query 1069 GTGCTTCTAATATGCGGCCACCTTATGGTAATGTTTTCCGTCCGTACCGCCCAGAGAATC 1128
||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 GTGCTGCCACTATGCGGCCACCTTATGGTAATGTTTTCCGTCCTTACCGCCCAGAGAATC 1139
Query 1129 TGAATCCTCCTA-TTGGTAATGGTTTCCGTCCAATGCAGCACCCGCGAAATGACGGGCCT 1187
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGAATCCTCC-AGTTGGTAATGGTTTCCGTCCAATGCAGCACCCGCGAAATGACGGGCCT 1198
Query 1188 AGGTTTCCGTCTCCACCTCTCTTTACTGCACCTGATATCAGCAATCTAAGTGTGTCTCAA 1247
|| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1199 AGATTTCCGTCTCCACCTCTCTTGACTCCACTTGATATCAGCAATCTAAGTGTGTCTCAA 1258
Query 1248 TATCCTAGTCAAACTCAAGATCGTCCTAATTTTAATCCTCAAGTTAGACAAGAATTCAGA 1307
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 TATCCTAGTCAAACTCAAAACCGTCCTAATTTCAATCCTCAAGTTAGACAAGAATTCAGA 1318
Query 1308 CCAAAGACGGAATCCTCATATTCTCATAATGGTCCAAATAAGGGTTATCTTACACGGACT 1367
||||||| ||||||||||||| |||||||||||||||||||| ||||| || ||||| |
Sbjct 1319 CCAAAGATGGAATCCTCATATACTCATAATGGTCCAAATAAGAGTTATATTCCACGGTGT 1378
Query 1368 AGTAGTGCCCCAGTAACTCATTCTACGACAACCACTGGCTACACCAACTCTTCCAGTCCT 1427
||||||||||| |||||||| |||||||||||||||| | ||||| || |||||||||||
Sbjct 1379 AGTAGTGCCCCGGTAACTCAATCTACGACAACCACTGCCCACACCTACCCTTCCAGTCCT 1438
Query 1428 GGAGTTCCACCTTCTCAGCCTCCAGTGGTTACTGGATCTGGTTCTAGCAATGGTATGTGG 1487
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 1439 GGAGTTCCACCTTCTCAGCCTCCAATGGTTACTGGATCTGGTTCTAGCAATGATAGGTGG 1498
Query 1488 GGAACACAAGAGTGTCCTCCACCATCTGAGTATGTTCAAGGCCTTATAGGCGTTATCTTA 1547
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GGAACACAAGAGTGTCCACCACCATCTGAGTATGTTCAAGGCCTTATAGGCGTTATCTTA 1558
Query 1548 CATGCTCTAAACATCTTGAAAACTGAAAAAGTTATGCCTACCGAGCCAAATATCTCGGAT 1607
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CATGCTCTACACATCTTGAAAACTGAAAAAGTTATGCCTACCGAGCCAAATATCTCGGAT 1618
Query 1608 TGCATTCAGTACGGAGATCCAAAGCATCGCGGTACTGACATAAAGAAGGCTTTGGAAAGT 1667
||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 1619 TGCATTCAGTATGGAGATCCTAAGCATCACGGTACTGACGTAAAGAAGGCTTTGGAAAGT 1678
Query 1668 GCATTGGAGCATCATATGATCGTGGTGTCAAATGTAGGTAAACTAAAGCTCTACATTGGC 1727
|| |||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1679 GCTTTGGAGCATCATATGATCATGATGACAAATGTAGGTAAACTAAAGCTCTACATTGGC 1738
Query 1728 AAAAATGAAGCTCTTTGGAACTGTGTAAACCCTTTAGGGGCAAACGCTAAGCAATACCCA 1787
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AAAAATGAAGCTCTATGGAACTGTGTAAACCCTTTAGGGGCAAACGCTAAGCAATACCCA 1798
Query 1788 AAAGCAACTTGGGATAGAATACAAGAGTTTCTAACCTCATCTTCTGGTCGTGTGGCGTTT 1847
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 1799 AAAGAAACTTGGGATAGAATACAACAGTTTCTAACCTCATCTTCTGGGCGTGTGGAGTTT 1858
Query 1848 ACGGCAACT-CAGTGCAGGTATGAAGCTGCCCAAGTTCTGAAAAAGGAATGTCTAAAAGA 1906
||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1859 ACGGCAACTAC-GTGCAGGTATGAAGCTGCACAAGTTCTGAAAAAGGAATGTCTAAAAGA 1917
Query 1907 GCTTACTTTAGGTGACATACTACAGATCTTGAATATAACAGCAACCACAAAGAAATGGAT 1966
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GTTTACTTTAGGTGACATACTACAGATCTTGAATATAACAGCAACCACAAAGAAATGGAT 1977
Query 1967 TACTCATCATCAAACCGGATGGAAACCAATTACTATTAGCCTTGCTGCAAAGACAAAAGA 2026
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1978 TACCCATCATCAAACAGGATGGAAACCAATTACTATTAGCCTTGCTGCAGAGAC------ 2031
Query 2027 GACAACAAACGAGACAGCTACCGAAACGGATACAGGTATCCAAACTGTTGCCTG 2080
|| |||||||||||||||| ||| ||||| ||||||||||||| ||||||||
Sbjct 2032 --CA-CAAACGAGACAGCTACTGAAGCGGATCCAGGTATCCAAACCGTTGCCTG 2082
> AT1G76911.1 | Symbols: | Pseudogene of AT3G62200 | chr1:28887242-28887982
REVERSE LENGTH=741
Length=741
Score = 575 bits (311), Expect = 6e-163
Identities = 476/548 (87%), Gaps = 41/548 (7%)
Strand=Plus/Plus
Query 464 TGCTCTTCACGGATTGAGAATGAGACGTTACAATGTTCTATTGGCACAGCCTCTCAAAGC 523
||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 9 TGCTCTTCACGGATTGAGAATGAGACGTTACAATGTTTTTTTGGCAAAGCCTCTCAAAGC 68
Query 524 ATCTGTGC--C---AC--T-TGTTCATGCTGCAAAGACTGTGTGGCTTTGGACAAGCCTA 575
|||||| | | || | | ||||||||||||||| |||||||||||||||||||||
Sbjct 69 ATCTGTACAACGGTACAATGTTTTCATGCTGCAAAGAGTGTGTGGCTTTGGACAAGCCTC 128
Query 576 TCTGCTGGAGGAATCCCTCTTACACGAGCCGAAAGCTTACAACTTGTTGCCAACCAGACG 635
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 129 TCTGCTGGAGGAATCCCTCTTACACGAGCCGAAAGCTTACAACTTGTTGCGAACCAGACG 188
Query 636 ACCCCAACATCTGGTTCAGAGATTCCATCAAGCCAACCTCTGGATTCAAATTTTGACTCC 695
| | | | | || | || || |||||||||||||| ||||||
Sbjct 189 A-----------G-T--ATAC---CC-T-AA-CC----TCTGGATTCAAATTCCGACTCC 224
Query 696 AGGAGAGTCTTTGACAACAAACCCAAGGTGAAATACCTTCCAAAACAATCAAATCATCAG 755
||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||
Sbjct 225 AGGAGAGTCTTTGACAACAAATCCAAGGTCAAATATGTTCCAAAACCATCAAATCATCAG 284
Query 756 CCTAACAATAACTACCGTCAGCAACA---GAACACTCAAGGGAAACAGTTTAAGAAAGCC 812
|| |||||||| |||||||||||||| |||||||||| ||| ||| |||||||||| |
Sbjct 285 CCGAACAATAATTACCGTCAGCAACAACAGAACACTCAAAGGATACACTTTAAGAAAGAC 344
Query 813 CCACATGAGTTCTTTGGCAGTAGCGAGCCATCTGTTTCCACTAGCAGACCTCCTCCCAAT 872
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 345 CCACATGAGTTCTTTG-CAGTAGCGAGCCATCTGTTTCCACTAGCAGACATCCTCCCAAC 403
Query 873 TTACCCTCTAGCAATGTTAACACTTTCCCTGGTAATGTGATGACTAATCCTCAGAATCAG 932
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 404 TTACCCTCTAGCAATGCTAACACTTTCCCTGGTAATGTCATGACTAATCCTCAGAATCAA 463
Query 933 AATCAGTACAATTATCCTCCTCGACCTGGTCCTTTCCCTCCCAGACAACCTTACCCTAAC 992
||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 464 AATCA---C--TTATCCTCCTCGACCTGGTCCTTTCCCTCCTAGATAACCTTACCCTAAC 518
Query 993 CCTGATCC 1000
|||||||
Sbjct 519 TCTGATCC 526
Score = 248 bits (134), Expect = 2e-64
Identities = 184/208 (88%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 1119 CCAGAGAATCTGAATCCTCC--TATTGGTAATGGTTTCCGTCCAATGCAGCACCCGCGAA 1176
||||||| |||| ||| ||| ||||||||| |||||||||||||||||||| ||||| |
Sbjct 534 CCAGAGACTCTGCATCGTCCTATATTGGTAACGGTTTCCGTCCAATGCAGCATCCGCGTA 593
Query 1177 ATGACGGGCCTAGGTTTCCGTCTCCACCTCTCTTTACTGCACCTGATATCAGCAATCTAA 1236
|| || |||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 594 ATTACAGGCCTAGGTTTCCGTCTCCACCTCTCTTGACTGCTCCAGATATCAGCAATCTAA 653
Query 1237 GTGTGTCTC--AATATCCTAGTCAAACTCAAGATCGTCCTAATTTTAATCCTCAAGTTAG 1294
||||||||| ||||||||| |||||| ||| ||| ||||||||| |||||||||| ||
Sbjct 654 GTGTGTCTCTCAATATCCTAATCAAACGCAAAATCTTCCTAATTTCAATCCTCAAGATAT 713
Query 1295 ACAAGAATTCAGACCAAAGACGGAATCC 1322
|||||||||||||||||| | |||||||
Sbjct 714 ACAAGAATTCAGACCAAAAATGGAATCC 741
> AT3G62210.1 | Symbols: EDA32 | Putative endonuclease or glycosyl
hydrolase | chr3:23026609-23028306 REVERSE LENGTH=1334
Length=1334
Score = 536 bits (290), Expect = 3e-151
Identities = 445/519 (86%), Gaps = 14/519 (3%)
Strand=Plus/Plus
Query 106 CGGCGGAGATGGCTGAGGCTCAGTACGTGAGGGCGAAGACTTCAGTGTGGTGGGATATAG 165
||||||| | |||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 225 CGGCGGATACGGCTGAGGCTCAGTACGTGATGGCGAAGACCTCAGTATGGTGGGATATAG 284
Query 166 AGAATTGTCAAGTCCCAAAAGGTCTTGACGCTCATGGAATTGCTCAGAATATTACTTCTG 225
|||||||||||||||| || |||||||| || ||||| |||||||||||||||| ||| |
Sbjct 285 AGAATTGTCAAGTCCCTAAGGGTCTTGATGCACATGGGATTGCTCAGAATATTAGTTCGG 344
Query 226 CGCTTCAGAAGATGAACTATTGTGGTCCTGTTTCTATCTCTGCTTATGGTGATACCAATC 285
||||| |||| |||||||||||||||| || || ||||| |||||||||||||| | |
Sbjct 345 CGCTTAAGAAAATGAACTATTGTGGTCGGGTCTCAATCTCCGCTTATGGTGATACGAGTG 404
Query 286 GCATCCCT-TTGTCGATCCAACACGCTCTTAATTCCACCGGAATTGCGCTCAACCACGTC 344
| |||||| |||| |||||||| |||||||||||||||||||| | |||| |||| |||
Sbjct 405 GTATCCCTCATGTC-ATCCAACATGCTCTTAATTCCACCGGAATCGAGCTCCACCATGTC 463
Query 345 CCTGCCGGCGTGAAAGATGCGAGTGATAAGAAGA-TCTTAGTGGACATGTTGTTTTGGGC 403
|| ||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 464 CCGGCCGGGGTGAAAGATGCGAGTGACAAGAAGATTC-TAGTGGACATGTTGTTTTGGGC 522
Query 404 GTTGGACAATCCTGCGCCTGCAAATTTTATGTTAATATCAGGAGATAGAGACTTTTCCAA 463
|| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 523 ATTTGACAATCCTGCGCCTTCAAATATTATGTTAATTTCAGGAGATAGAGACTTTTCCAA 582
Query 464 TGCTCTTCACGGATTGAGAATGAGACGTTACAATGTTCTATTGGCACAGCCTC-TCAAAG 522
|||||||||| |||||| ||||||| |||||| |||| || ||||| |||| | ||||
Sbjct 583 TGCTCTTCACAAATTGAGTCTGAGACGGTACAATATTCTCTTAGCACACCCTCCT-AAAG 641
Query 523 CATCTGTGCCACTT-GTTCATGCTGCAA-AGACTGTGTGGCTTTGGACAAGCCTATCT-G 579
|||| | ||| || || || ||||||| | || || |||||||||||||| |||| | |
Sbjct 642 CATCAGCGCCGCTAAGT-CAAGCTGCAACA-ACAGTATGGCTTTGGACAAGTCTAT-TAG 698
Query 580 CTGGAGGAATCCCTCTTACACGAGCCGAAAGCTTACAAC 618
| ||||||| |||||| | ||||| | |||| ||| |||
Sbjct 699 CCGGAGGAAACCCTCTCATACGAGGC-AAAG-TTAAAAC 735
> AT1G76910.1 | Symbols: | unknown protein; Has 0 Blast hits to
0 proteins in 0 species (source: NCBI BLink). | chr1:28887218-28888104
FORWARD LENGTH=420
Length=420
Score = 117 bits (63), Expect = 5e-25
Identities = 84/94 (89%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 1119 CCAGAGAATCTGAATCCTCC--TATTGGTAATGGTTTCCGTCCAATGCAGCACCCGCGAA 1176
||||||| |||| ||| ||| ||||||||| |||||||||||||||||||| ||||| |
Sbjct 146 CCAGAGACTCTGCATCGTCCTATATTGGTAACGGTTTCCGTCCAATGCAGCATCCGCGTA 87
Query 1177 ATGACGGGCCTAGGTTTCCGTCTCCACCTCTCTT 1210
|| || ||||||||||||||||||||||||||||
Sbjct 86 ATTACAGGCCTAGGTTTCCGTCTCCACCTCTCTT 53
Score = 102 bits (55), Expect = 1e-20
Identities = 62/65 (95%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 801 TTTAAGAAAGCCCCACATGAGTTCTTTGGCAGTAGCGAGCCATCTGTTTCCACTAGCAGA 860
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 230 TTTAAGAAAGACCCACATGAGTTCTTT-GCAGTAGCGAGCCATCTGTTTCCACTAGCAGA 172
Query 861 CCTCC 865
| |||
Sbjct 171 CATCC 167
Score = 67.6 bits (36), Expect = 5e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Minus
Query 598 CACGAGCCGAAAGCTTACAACTTGTTGCCAACCAGACGA 636
|||||||||||||||||||||||||||| ||||||||||
Sbjct 312 CACGAGCCGAAAGCTTACAACTTGTTGCGAACCAGACGA 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103111919430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5