BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486730
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62250.1 | Symbols: UBQ5 | ubiquitin 5 | chr3:23037094-23037... 965 0.0
AT2G47110.1 | Symbols: UBQ6 | ubiquitin 6 | chr2:19344635-19345... 616 1e-175
AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 616 1e-175
AT1G23410.1 | Symbols: | Ribosomal protein S27a / Ubiquitin fa... 425 2e-118
> AT3G62250.1 | Symbols: UBQ5 | ubiquitin 5 | chr3:23037094-23037797
FORWARD LENGTH=704
Length=704
Score = 965 bits (522), Expect = 0.0
Identities = 610/650 (94%), Gaps = 15/650 (2%)
Strand=Plus/Plus
Query 1 AAAATCCCCATTTTGAT-CT-TTTAGTCCAGCCGTTGCCTCAAAAGATGCAGATCTTCGT 58
||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 1 AAAATCCCCATTTTGATAATCTTCAG--CAGCCGTTGCCTCAAAAGATGCAGATCTTCGT 58
Query 59 GAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCGTCCGATACCATCGACAA 118
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 59 GAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTTGAATCATCCGACACCATCGACAA 118
Query 119 TGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATTTT 178
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATTTT 178
Query 179 CGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAGTC 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CGCCGGGAAACAGCTTGAAGACGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAATC 238
Query 239 GACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTaagaagaggaagaagaagactta 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTAAGAAGAGGAAGAAGAAGACTTA 298
Query 299 caccaagccgaagaagatcaagcataagcataagaagGTTAAGCTCGCTGTTCTTCAGTT 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 CACCAAGCCGAAGAAGATCAAGCACAAGCATAAGAAGGTTAAGCTCGCTGTTCTTCAGTT 358
Query 359 TTACAAAATCGATGGATCTGGAAAAGTTCAGCGTCTGAGGAAAGAGTGCCCTAACGCAAC 418
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 359 TTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAGGAAGGAGTGCCCTAACGCAAC 418
Query 419 TTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGCCATTACTGTGGTAAGTGTGG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGCCATTACTGTGGTAAGTGTGG 478
Query 479 ACTCACCTACGTTTACCAGAAAGAAGGAGGTGACGAATGATCTGTTCTTGCAAGCGGTAG 538
||||||||||||||||||||||||||||| ||| | ||||||||| | | |||||||
Sbjct 479 ACTCACCTACGTTTACCAGAAAGAAGGAGTTGAAGCTTGATCTGTTGT---A-GCGGTAG 534
Query 539 ATCTATC-TT-T-TT-CTCTCTTATCTTTAAAAAACTGCATTTCTATTTGGGAAATTTGT 594
||| ||| || | || ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 535 ATCGATCCTTCTCTTTCTCTCTTATCTTTTAAAAACTGCATTTCTATTTGGGAATTTTGT 594
Query 595 AAGCtttttt-tttG--TTATCATGGATCCTATGTTGAACATCTTTCGTT 641
||||| ||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 595 AAGCTCTTTAATTTGAGTTATCATGGATTCTATGTTGAACATCTTTCGTT 644
> AT2G47110.1 | Symbols: UBQ6 | ubiquitin 6 | chr2:19344635-19345345
FORWARD LENGTH=711
Length=711
Score = 616 bits (333), Expect = 1e-175
Identities = 432/481 (90%), Gaps = 2/481 (0%)
Strand=Plus/Plus
Query 40 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAAT 99
|||||||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct 62 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAGT 121
Query 100 CGTCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
| || || |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 122 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 181
Query 160 ACCAGCAGCGATTGATTTTCGCCGGGAAA-CAGCTGGAAGACGGCCGTACCCTCGCCGAC 218
||||||||||||||||||||||||| ||| ||||| |||||||| |||||| | |||||
Sbjct 182 ACCAGCAGCGATTGATTTTCGCCGG-AAAGCAGCTCGAAGACGGACGTACCTTAGCCGAT 240
Query 219 TACAACATCCAGAAGGAGTCGACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTaag 278
||||||||||||||||| || |||||||| || ||||| ||||||||||| |||||||||
Sbjct 241 TACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAGGTGCTAAG 300
Query 279 aagaggaagaagaagacttacaccaagccgaagaagatcaagcataagcataagaagGTT 338
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 301 AAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACAAGAAGGTC 360
Query 339 AAGCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAAGTTCAGCGTCTGAGG 398
|||||||||||||||||||| ||||| | ||||| || || || ||||||||| |||||
Sbjct 361 AAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGAGG 420
Query 399 AAAGAGTGCCCTAACGCAACTTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 421 AAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGATCGT 480
Query 459 CATTACTGTGGTAAGTGTGGACTCACCTACGTTTACCAGAAAGAAGGAGGTGACGAATGA 518
|| ||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||
Sbjct 481 CACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTCAGGAATGA 540
Query 519 T 519
|
Sbjct 541 T 541
> AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10660.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:19344668-19346921 REVERSE LENGTH=1668
Length=1668
Score = 616 bits (333), Expect = 1e-175
Identities = 432/481 (90%), Gaps = 2/481 (0%)
Strand=Plus/Minus
Query 40 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAAT 99
|||||||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct 1640 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAGT 1581
Query 100 CGTCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
| || || |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1580 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 1521
Query 160 ACCAGCAGCGATTGATTTTCGCCGGGAAA-CAGCTGGAAGACGGCCGTACCCTCGCCGAC 218
||||||||||||||||||||||||| ||| ||||| |||||||| |||||| | |||||
Sbjct 1520 ACCAGCAGCGATTGATTTTCGCCGG-AAAGCAGCTCGAAGACGGACGTACCTTAGCCGAT 1462
Query 219 TACAACATCCAGAAGGAGTCGACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTaag 278
||||||||||||||||| || |||||||| || ||||| ||||||||||| |||||||||
Sbjct 1461 TACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAGGTGCTAAG 1402
Query 279 aagaggaagaagaagacttacaccaagccgaagaagatcaagcataagcataagaagGTT 338
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1401 AAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACAAGAAGGTC 1342
Query 339 AAGCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAAGTTCAGCGTCTGAGG 398
|||||||||||||||||||| ||||| | ||||| || || || ||||||||| |||||
Sbjct 1341 AAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGAGG 1282
Query 399 AAAGAGTGCCCTAACGCAACTTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1281 AAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGATCGT 1222
Query 459 CATTACTGTGGTAAGTGTGGACTCACCTACGTTTACCAGAAAGAAGGAGGTGACGAATGA 518
|| ||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||
Sbjct 1221 CACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTCAGGAATGA 1162
Query 519 T 519
|
Sbjct 1161 T 1161
> AT1G23410.1 | Symbols: | Ribosomal protein S27a / Ubiquitin
family protein | chr1:8314924-8315531 FORWARD LENGTH=608
Length=608
Score = 425 bits (230), Expect = 2e-118
Identities = 380/453 (84%), Gaps = 7/453 (2%)
Strand=Plus/Plus
Query 41 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATC 100
||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 14 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAATC 72
Query 101 GTCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 160
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 ATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 132
Query 161 CCAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTA 220
||||| || ||||| |||||||| ||||| ||||||| || | || || || || ||
Sbjct 133 TCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGATTA 192
Query 221 CAACATCCAGAAGGAGTCGACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTaagaa 280
|||||||||||| ||||||||||||||| |||| || ||||| | || ||||| |||||
Sbjct 193 CAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTGCGAAGAA 252
Query 281 gaggaagaagaagacttacaccaagccgaagaagatcaagcataagcataagaagGTTAA 340
||||||||||||||| ||||| || || |||||||| ||||||| ||| ||||| || ||
Sbjct 253 GAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACAAGAAAGTGAA 312
Query 341 GCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAAGTTCAGCG-TCTGAGGA 399
||| || ||||| ||||||||||| | |||||| ||| ||||||||| | | ||| ||
Sbjct 313 GCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGAGGT-TGAAGA 371
Query 400 AAGAGTGCCCTAAC-GCAACTTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
||||||| ||| | | | |||||| |||| |||||||||||||||||||| ||| |
Sbjct 372 AAGAGTGTCCTT-CTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCATTTCGATAGG 430
Query 459 CATTACTGTGGTAAGTGTGGA-CTCACCTACGT 490
||||| ||||| || |||||| || || |||||
Sbjct 431 CATTATTGTGGGAAATGTGGAACT-ACTTACGT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5