BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486736
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62300.2 | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 ... 3153 0.0
> AT3G62300.2 | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724
7 | chr3:23054004-23057180 FORWARD LENGTH=2514
Length=2514
Score = 3153 bits (1707), Expect = 0.0
Identities = 2137/2339 (91%), Gaps = 52/2339 (2%)
Strand=Plus/Plus
Query 1 AGCTCACTTTATCTTTCGTCTCTCTTCTTCTTAGGTCTAGGGTTCTGGT------GA-T- 52
|||||||||||||||||| |||| |||||||||||||||||||||||| || |
Sbjct 155 AGCTCACTTTATCTTTCG--TCTC-TCTTCTTAGGTCTAGGGTTCTGGTGGAGAAGATTG 211
Query 53 T-GTTG---CTTTGGGTTTTCTGAGAGAAACCATGTTGTTAACTACGGGAAGAAAGGAGA 108
| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 212 TGGTTGTTTCTTAGGGTTTTCTGAGAGAAAGCATGTTGTTAACTACGGGAAGAAAGGAGA 271
Query 109 AACTCTCCGTTTCTAAAGGTTCTGAAATTGAAGTCTCTTCTCAAGAGTATGAGTATGGTA 168
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 272 AACTCTCTGTTTCTAAAGGTTCTGAAATTGAAATCTCGTCTCAAGAGTATGAGTATGGTA 331
Query 169 CTGGCAATGTCTGGTACTGCGCCATTCTCGAAGAAACTCTAGCTAAATCGAAGCGGAAGA 228
||| ||||||||||| || | |||||||||||||| |||||||||||||||||||||||
Sbjct 332 GTGGAAATGTCTGGTATTGTGTCATTCTCGAAGAAAATCTAGCTAAATCGAAGCGGAAGA 391
Query 229 AGCTCTCCGTTCGTCACTTGGATCCTCTGCTCAAGGATGATTATTCTCCTCCGTTAATTC 288
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 392 AGCTCTCTGTCCGTCACTTGGATCCTCTGCTCAAGTATGATTATTCTCCTCCGTTAA-TC 450
Query 289 -AAACCACCGTGCATCGTTTGATGCGTCCAGTTCCGCCGCCGGATCCGTTTCCAGAGGTC 347
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 451 AAAACCACCGTGCATCGTTTCATGCGTCCAGTTCCGCCGCCGGATCCATTTCCAGAGGTC 510
Query 348 GATTTTGAGGAAGGTGACGTGGTTGACGCTGCTCATAAAGGTGGTTGGTGGTCTGGCTTG 407
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 511 GATTTTGAGGAAGGTGACGTGGTTGACGCTGCTTATAAAGGTGGTTGGTGTTCTGGCTCG 570
Query 408 GTGATTAAAGTGCTGGGAAATCGGCGTTTCTTGGTGTATCTCAGATTCCAACCTGATGTC 467
||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 571 GTGGTTAAAGTTTTGGGAAATCGGCGTTTCTTAGTGTATCTTAGATTCCAACCTGATGTC 630
Query 468 ATCGAGCTTCAACGAAAGGATCTGCGTCCGCATTTCACTTGGAAAGATGACGAATGGTTT 527
|| ||||||| |||||||||||||||||| |||||| |||||||||||| || ||||||
Sbjct 631 ATTGAGCTTCTACGAAAGGATCTGCGTCCCCATTTCGTTTGGAAAGATGAAGAGTGGTTT 690
Query 528 CGATACGAGAAACTACAATTGACTGAGTCGGATTTTAGTGCCGGAAAGTCTGTAGAAGTC 587
|||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||
Sbjct 691 CGATGCGAGAAACAACAATTGATTGAGTCAGATTTTAGTGCTGGAAAGTCTGTTGAAGTC 750
Query 588 AGAACCGAGGTACAC-AATTCGGGCCATGTTTGGGCTCCGGCTATGGTCATTAAGGAGAA 646
|||||| ||||| || |||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 751 AGAACCAAGGTAGACAAATT-GGGCGATGTTTGGGCTCCGGCTATGGTCATTAAGGAGGA 809
Query 647 TGAAGATGGGACATTATTGGTGAAGTTGAAGACTTTG-AGCGATGAAGAGGTCGATTGCA 705
||| ||||||||| | ||||||||||||||||||||| || || |||||||| ||||||
Sbjct 810 TGAGGATGGGACAATGTTGGTGAAGTTGAAGACTTTGAAG-GAGGAAGAGGTTAATTGCA 868
Query 706 CCAAGATAAGCGTTTCTTATTCCAAAATCCGACCTTCACCACTGCCTATTGGTTTAAGAG 765
| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 869 CAAAGATAAGCGTTTCTTATTCCGAAATCCGACCTTCGCCATTGCCTATTGGTTTAAGAG 928
Query 766 ATTACAAATTGATGGAAAATGTGGATGCGCTTGTTGAGTCTGGATGGTGTCCGGGTGTTG 825
||||||||||||||||||| ||||||||||| || |||||||| |||||||| |||||||
Sbjct 929 ATTACAAATTGATGGAAAACGTGGATGCGCTAGTAGAGTCTGGTTGGTGTCCTGGTGTTG 988
Query 826 TTAGTAAAGTTC-TGTTTGGGAAGCGATACGCAGT-GACTTTGGGGCCAAACAAGGAGAG 883
|||||||||||| || ||||||| |||||||||| || |||||||||||||| ||||||
Sbjct 989 TTAGTAAAGTTCTTG-CTGGGAAGAGATACGCAGTGGA-TTTGGGGCCAAACAGGGAGAG 1046
Query 884 TAAGGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAGTTTGGCA 943
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1047 TAAGGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAATTTGGCA 1106
Query 944 TA-AAGAAGAAAAAGTTT-ATGATAGCGAAGAGAGTTCGCATGCAGTTGAAGAAACAGCT 1001
|| || ||||||| |||| | | |||||| || |||||||||||||||||||||||||||
Sbjct 1107 TAGAA-AAGAAAAGGTTTCA-GGTAGCGAGGAAAGTTCGCATGCAGTTGAAGAAACAGCT 1164
Query 1002 CG-TTCAACCCGCATAAGGGTAACTGTTCGAACTGCCTTGAGAGAGAAAAATGCTTCGGC 1060
| |||||||||||||||| | ||||||||||||||||||| ||||||||| |||| ||
Sbjct 1165 -GCTTCAACCCGCATAAGGATCACTGTTCGAACTGCCTTGAAAGAGAAAAAAGCTTTGG- 1222
Query 1061 CT-CAGTAAAAAATTTGAGGGCGACACGCTCTTCTAGTGGTGCTATCCAGAATATGCAGA 1119
| | | || ||| ||||| ||||||||||||||||| | | || |||||| |
Sbjct 1223 GTACTGGAATCAATGTGAGGACGACACGCTCTTCTAGT-G-G------AG-CTATGCATA 1273
Query 1120 ATCCTCTTCCTGCCTC-TTCCA--GTGGAGATGTTGCAGAGGCTGGTAGAGCATCTGTCA 1176
| |||||||||||||| ||| | | ||||||||||||||||||||||||| ||||||||
Sbjct 1274 ACCCTCTTCCTGCCTCTTTCAATGGAGGAGATGTTGCAGAGGCTGGTAGAGTATCTGTCA 1333
Query 1177 CTGTGAGTGAAACACCGCTCTCCGTAACTGCAGCT---TTATCTGGAGAATTAGGGAGTA 1233
|||||| |||||||||||||| || |||||||||| |||||||||||| |||||| ||
Sbjct 1334 CTGTGAATGAAACACCGCTCTTCGAAACTGCAGCTCAGTTATCTGGAGAACTAGGGAATA 1393
Query 1234 GGATGACTGATGTTGTGATGAATGAGAACACTCCAGTCACAAGCCAACCGGAGATAGCAG 1293
| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1394 GTTTGGCTGATGTTGTGATGAATGAGAGCGCTCCAGTCACAAGCCAACCGGAGATAGCAG 1453
Query 1294 CACCAAAAGATTTTCACCCATCGATAGTCCTGGGCGTAGCCGCAGCGGTCAAAACACAAG 1353
|||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 1454 CACCAAAAGAGTTTCACCCATCGGTAGTCCTGGGCGTAGCTGCAGCAGTCAAAACACAAG 1513
Query 1354 GAAAAACATCTCCAAAGAAGAAACTTCAGGCAATGAAGAATCAAAAGAGCTCTACAAATG 1413
|||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1514 GAAAAACAACTCCGAAGAAGAAACTTCAAGCGATGAAGAATCAAAAGAGCTCTACAAATG 1573
Query 1414 ATTCTGCTAAAGAGAAGGTGAGTGTTAATAAGAGGAAAAGAGGACAGCCACGCAAGTTCA 1473
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1574 ATTCTGTTGGAGAGAAGGTGAGTGTTAACAAGAGGAAAAGAGGACAGCCACGCAAGTTCA 1633
Query 1474 TAAG-CACAGAGCCTAAGCAGAAGACTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACT 1532
| || | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1634 T-AGTCGCAGAGCCTAAGCAGAAGATTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACT 1692
Query 1533 ATTGAACATACCGATATGACTGAGGATGATAGGCCTCTTGCTTCATGGATCCACGCTGGA 1592
||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| |||||
Sbjct 1693 ATTGAACATGCCGATATGACTGATGATGATAGGCCTCTCGCTTCATGGGTCCACACTGGA 1752
Query 1593 AATTCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATCTAGGGCTTAATACAGTTGTG 1652
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1753 AATTCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATATAGGGCTTAATACAGTTGTG 1812
Query 1653 GAAAAGCATGTCGATGTTTTGGAAACTCCCCCAGCGAGAGAGTCGACAATGGTTCTACCA 1712
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1813 GAAAAGCATGTCGATATTGTGGAAACTCCCCCAGGGAGAGAGTCGACAATGGTTCTGCCA 1872
Query 1713 TTTGTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAA-ACAGT 1771
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1873 TTTGTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAAGTC-GT 1931
Query 1772 GCCACAGCGTCCACATTTCAGTCCACTGCTAGATAGCGAAGAAGAGTTCCGTGAAGGAGA 1831
||||||| ||||||||||||| || |||||||| ||||||||||||| ||||||||||||
Sbjct 1932 GCCACAGAGTCCACATTTCAGCCCTCTGCTAGAGAGCGAAGAAGAGTGCCGTGAAGGAGA 1991
Query 1832 TGCTATTGGTACAATGGTGAAGTTTAGTTCGCTGTTAGAGAAAGTCAACAACCTACAAGT 1891
|| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1992 CGCCATTGGTAGAATGGTGATGTTTAGTTCGCTGTTAGAGAAAGTCAACAATCTACAAGT 2051
Query 1892 CGACGATCCAATAAGCTCGATTAATAGGATTGACGAGTGTTTCCTCAAGCTTGAAAAACA 1951
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 2052 CGACGATCCAATAAGCTCGATTAACAGGATCGACGAGTGTTTCCTCAAGCTTGAGAAACA 2111
Query 1952 CGGGTTCAATGTTACAACACCTCGATCTCGGATCGCCAAGCTATTGTCCATTAAAGAAAG 2011
|||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||
Sbjct 2112 CGGGTTCAATGTTACAACACCTCGATCTAGGATAGCCAAGATACTGTCCATTAAAGAAAG 2171
Query 2012 GCAGACATGCGCATTGGAAGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAA 2071
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2172 GCAGACATGCGCATTGGAGGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAA 2231
Query 2072 TAAAAGAAGGAAGTATGAAGAAGATATTGCTGAATTGCAGAGACAAGAAGTGTTGATGAA 2131
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 2232 TAAAAGAAGGAAGTATGAAGAAGATATTGTTGAATTGCAGAGGCAAGAAGTGTTGATGAA 2291
Query 2132 GGAAGCAAAAGTAACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCT 2191
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 GGAAGCAAAAGTCACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCT 2351
Query 2192 TGACCAAAAGGTTCAGAATGTAGATCAGGAGTTTCAGGCAATTGTCGCTACCCAATGGAA 2251
||||||| ||||||||||||||||||| || |||||||||||| ||||| ||| ||||||
Sbjct 2352 TGACCAAGAGGTTCAGAATGTAGATCACGAATTTCAGGCAATTCTCGCTGCCCCATGGAA 2411
Query 2252 ATAAGCAAGTCGTAGATCAGACGTTTATGTTTAAGAATAATTGAGTTCTCTGTAAGTTG 2310
||||||||||||| ||||| || ||| |||||||||||||||||| |||||||| ||||
Sbjct 2412 ATAAGCAAGTCGTTGATCAAACCTTTGTGTTTAAGAATAATTGAGATCTCTGTACGTTG 2470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114658044780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5