BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486738
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62340.1 | Symbols: WRKY68, AtWRKY68 | WRKY family transcrip... 1447 0.0
AT3G62350.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 209 5e-53
> AT3G62340.1 | Symbols: WRKY68, AtWRKY68 | WRKY family transcription
factor | chr3:23069516-23071207 REVERSE LENGTH=1519
Length=1519
Score = 1447 bits (783), Expect = 0.0
Identities = 1259/1468 (86%), Gaps = 115/1468 (8%)
Strand=Plus/Plus
Query 1 TGCTTGGTCTAAGGGCTGCTTACTTTCGAAGGATTGGAGAGGACCAAAAACAAGTTTCGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TGCTTGGTCTAAGGGCTGCTCACTTTCGAAGGATTGGAGAGGACCAAAATCAAGTTTCGT 60
Query 61 TTGATAGTCTAAGAACGGTGATTTGGTATTCGCCGACTATGATTTCTCCATCAAATTTGC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGATAGTATAAGAACGGTGATTTGGTATTCGCCGACTATGATTTCTCCATCAAATTTGT 120
Query 121 TGCTTTGATGTTGTTTCTACCTTCTATTGATTTTTA-AAATATCAAAAGCTTTTAAGTTT 179
|| |||||||||||||| |||||||| ||| || | |||| |||||||||||| |||||
Sbjct 121 TGGTTTGATGTTGTTTCAACCTTCTA-TGA-TTAAATAAATCTCAAAAGCTTTTGAGTTT 178
Query 180 TTAACATCAC-AGATACTAGTAGGAAGAAAAGCTAAtttttttGTCAA-AGG-ATA-AAA 235
||||| |||| || ||| ||||| |||||||||| || | | || ||| | | |||
Sbjct 179 TTAACTTCACAAG-TACAAGTAGAAAGAAAAGCT--CTTGACT-TAAAGAGGAAGAGAAA 234
Query 236 AAGTAAATG-TTTGTATTTAAAAAAGGTATAG-A-AGTGGGCGTCG-TTGTGGTGTGTTG 291
|| ||||| |||||||||||| |||||| || | ||| || | | | || || |||
Sbjct 235 AA-AAAATGTTTTGTATTTAAAGAAGGTACAGTATAGT-GGAAT-GACT-TGAAGTATTG 290
Query 292 GGATGCACATGATCCAACGCTGAAGA--TTAC-------A--C---A--ATTTATCTTGG 335
|| |||||||||||||||||||| || |||| | | | || ||||||||
Sbjct 291 GGCTGCACATGATCCAACGCTGAGGATTTTACAATTATAATTCAAAAGCATATATCTTGG 350
Query 336 TCAT-CTCGGTTAACTGCTGAACCGGTCAAAAAGAAAACACGCGAAAATGTATCTTGTCC 394
|||| | ||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||
Sbjct 351 TCATAC-CGGTTAACTACTGAAGCGGTCAAAAATAAAACACACGAAAACGTATCTTGTCC 409
Query 395 AAACGACACGCAGATTAATTAATGTTTAAAGAC--T-ATCCACCTACAATAGCCGGTCAT 451
||||||||||||||||||||| |||||||| || | | |||| |||||||||||||||
Sbjct 410 AAACGACACGCAGATTAATTACTGTTTAAACACATTAAGCCACGTACAATAGCCGGTCAC 469
Query 452 CAATTCAAGGCATATATTTAGCAAGAATCAATGTTTCATTCCTCA--ctctatc-ttttc 508
||||||||||||| ||||||||| | ||| ||||||||||||||| |||| || |||||
Sbjct 470 CAATTCAAGGCATTTATTTAGCAGGCATCCATGTTTCATTCCTCACTCTCTCTCTTTTTC 529
Query 509 tctaaccctaaaatctcttttatctctttctct-t-tctttGGTTATGGAGAATATTGGT 566
||||||| |||||||||||| |||||||||||| | | |||| | ||||| ||| |||||
Sbjct 530 TCTAACCATAAAATCTCTTTGATCTCTTTCTCTGTGT-TTTGATAATGGAAAATGTTGGT 588
Query 567 GTTGGGATGCCGTTTTACGATTTAGGGCAAACAAGGGTTTACTCACACTTCTCTGACTTC 626
|||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||
Sbjct 589 GTTGGGATGCCGTTTTACGATTTAGGGCAAACAAGGGTTTACCCACTCTTGTCTGATTTC 648
Query 627 CACGATTTATCGGCGGAGAGGTATCCGGTAGGGTTCATGGATTTACTGGGTGTTCATCGT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CACGATTTATCGGCGGAGAGGTATCCGGTAGGGTTCATGGATTTACTGGGTGTTCATCGT 708
Query 687 CATGCACTCACCCATTCGCCGTTG-T-CGT---CGgaa-a-ag--aaga-gagat-ga-c 734
||| ||| ||||||| |||||||| | | | | || | | || | | || |
Sbjct 709 CATACACCCACCCATACGCCGTTGATGCATTTTCCGACCACACCTAACTCGTCCTCGAGC 768
Query 735 gaag-----aa-gaaga--a-gaagaagaagaagatggagaagaaCATCAGCATAAGACA 785
|||| || | ||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 769 GAAGCTGTGAATGGAGATGACGAAGAAGAAGAAGATGGAGAAGAACAGCAGCATAAGACA 828
Query 786 AATAAACGGTTTAAATTCACTAA---GAGTATTGAGAAGACGAAGATGAAGGTGCCAAAA 842
|| || ||||||||||||||||| ||||| || ||||||||| |||||||||||||
Sbjct 829 AAGAAGCGGTTTAAATTCACTAAAATGAGTAGAAAGCAGACGAAGAAGAAGGTGCCAAAA 888
Query 843 GTGTCATTCATCACGAAGAGTGAGGTTCTTCATCTAGATGATGGTTATAAGTGGAGAAAA 902
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTGTCATTCATCACGAGGAGTGAGGTTCTTCATCTAGATGATGGTTATAAGTGGAGAAAA 948
Query 903 TACGGTCAAAAACCTGTCAAAGACAGCCCTTTTCCAAGGAATTAT----G----AC---- 950
|||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 949 TACGGTCAAAAACCTGTCAAAGACAGCCCTTTTCCAAGAAATTATTACCGTTGCACAACA 1008
Query 951 ----G-TG--A----A-GAAGAGAGTAGAGAGATCATTCAGTGATCCAAGCAGTGTAATC 998
| || | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ACTTGGTGTGACGTGAAGAAGAGAGTAGAGAGATCATTCAGTGATCCAAGCAGTGTAATC 1068
Query 999 ACCACTTACGAAGGTCAACATACTCATCCTCGTCCAGTACTCATCATGCCCAAAGACCGC 1058
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1069 ACCACTTACGAAGGTCAACATACTCATCCTCGTCCACTACTCATCATGCCCAAAGAAGGC 1128
Query 1059 AGCTCTCGATCCAGTGGCTCAGATTCTAGGTCCCACTTTGGCCACTTTGGCCTCCGTACA 1118
||||||| ||||| |||||||| ||||||| ||||| |||||| | || | ||||
Sbjct 1129 AGCTCTCCATCCAATGGCTCAGCTTCTAGGGCCCACATTGGCC--T----CC-C--TACA 1179
Query 1119 CTCCCTCCTCAGCTTTTAGATTTcaacaaccatcaacaacaacaacaaGGGCCGTCGCCG 1178
|||||||||||||||||||||| ||||||||| | ||||||||| | | | | | |
Sbjct 1180 CTCCCTCCTCAGCTTTTAGATTACAACAACCA--A-CAACAACAA---G--C-G-C-C-G 1227
Query 1179 TCTTCTTTTGAAACCGAGTACATTAACAGGCAAGAAAAAGGAATTGATCGTGATGATGAT 1238
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1228 TCTTCTTTTGGAACCGAGTACATTAACAGGCAAGAAAAAGGAATTAATCATGATGATGAT 1287
Query 1239 GACGATCATGTTGTGAAGAAGAGTCGAACTCGGGATCTGTTGGATGGAGCTGGTTTAGTC 1298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1288 GACGATCATGTTGTGAAGAAGAGTCGAACTCGGGATCTGCTGGATGGAGCTGGTTTAGTC 1347
Query 1299 AAAGATCATGGCCTTCTTCAGGATGTTGTTTCCTCTCATATCATTAAGGAAGAGTATTAG 1358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1348 AAAGATCATGGCCTTCTTCAGGATGTTGTTCCCTCTCATATCATTAAGGAAGAGTATTAG 1407
Query 1359 TTAATCGCATAATTATGTAGCTATCTAG 1386
||||||||||||||||||||||| ||||
Sbjct 1408 TTAATCGCATAATTATGTAGCTAGCTAG 1435
> AT3G62350.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein (TAIR:AT1G71320.1); Has 136 Blast
hits to 136 proteins in 9 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr3:23071080-23071766
REVERSE LENGTH=687
Length=687
Score = 209 bits (113), Expect = 5e-53
Identities = 123/128 (96%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1 TGCTTGGTCTAAGGGCTGCTTACTTTCGAAGGATTGGAGAGGACCAAAAACAAGTTTCGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 560 TGCTTGGTCTAAGGGCTGCTCACTTTCGAAGGATTGGAGAGGACCAAAATCAAGTTTCGT 619
Query 61 TTGATAGTCTAAGAACGGTGATTTGGTATTCGCCGACTATGATTTCTCCATCAAATTTGC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TTGATAGTATAAGAACGGTGATTTGGTATTCGCCGACTATGATTTCTCCATCAAATTTGT 679
Query 121 TGCTTTGA 128
|| |||||
Sbjct 680 TGGTTTGA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5