BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486742
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box ass... 763 0.0
> AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box associated
interaction domain (InterPro:IPR017451); BEST Arabidopsis
thaliana protein match is: F-box family protein (TAIR:AT1G71320.1);
Has 422 Blast hits to 419 proteins in 26 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 420; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr3:23083523-23085035 REVERSE LENGTH=1247
Length=1247
Score = 763 bits (413), Expect = 0.0
Identities = 490/525 (93%), Gaps = 13/525 (2%)
Strand=Plus/Plus
Query 1 ATATTACAGAATATTTCCCTGACTCGTCTATTGAAAGAAAGAGGAAAAGAATTACAACAT 60
|||||| ||||||||| ||||| ||||||||| | || |||||||||||||||||||
Sbjct 4 ATATTAGAGAATATTT-CCTGAATCGTCTATT----G-AA-AGGAAAAGAATTACAACAT 56
Query 61 ACAT-CTATATATAAAGATACCAA-GAAATCCAAACACTTGCGAAGTTGATTACGTTGAA 118
|| | | || ||| | ||| || |||||||||||||||||||||||||| ||||||||
Sbjct 57 ACGTAC-ATCTATGTATATA-TAATGAAATCCAAACACTTGCGAAGTTGATAACGTTGAA 114
Query 119 GAGATTCTTGAGCGTCTTCCGGTGAAATCCCTCTTCCGATTCAAATCCGTGTCGAAGCAA 178
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 115 GAGATTCTTGAGCGTCTTCCGGTGAAATCGCTCTCCCGATTCAAATCCGTGTCGAAGCAA 174
Query 179 TGGAGATTAATGATCGAATCTAGCTATACCTCGCCAAGAAATGTCTTGTCCGACACCCAA 238
|||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 175 TGGAGATTAATGATCGAATCTACCTAT--CTCGCCAAGAAACGTCTTGTCCGACACCCAA 232
Query 239 ATCCAAAACTCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTAT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATCCAAAACTCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTAT 292
Query 299 TTTTGGATTCTTATTCAAAAGATCATCACGACCACATAAAAATCTTTATTCATTCTTACA 358
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 293 TTTTGGAAACTTATTCAAAAGATCATCACGACCACATAAACATCTTTATTCATTCTTACA 352
Query 359 CATCTCCAGTTCCATATCCCATATATTCTATTTATGATACAGTTGGTCAAATAATGGGGT 418
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 353 CATCTCCAGTTCCATATCCCAAATATTCTACTTATGATACAGTTGGTCAAATAATGGGGT 412
Query 419 ATTGCAACGGAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCTGCGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 413 ATTGCAACGGAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCCGCAA 472
Query 479 CAAGAAAACTCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGAATA 523
| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 473 CGAGAAAACTCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGTATA 517
Score = 431 bits (233), Expect = 9e-120
Identities = 338/386 (88%), Gaps = 17/386 (4%)
Strand=Plus/Plus
Query 687 TGGGTGGTCGAATGAATTGACATTTAGTGTGGGATTTGGAAGAGATATTGTTACAGGAAC 746
||| ||||||||||| ||| || ||| |||||||||||||||||| || |||||||||||
Sbjct 528 TGGTTGGTCGAATGATTTGCCAATTAATGTGGGATTTGGAAGAGACATGGTTACAGGAAC 587
Query 747 ATACAAAGTAATATTGGTGTATTTATTCGATCGTAAGGTTGTCAAGACCGAAGCCTTAAA 806
|||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 588 ATACAAAGTAATCTTGATGTATTTATTCGATCGTAATTTTGTCAAGACCGAAGCCTTAAA 647
Query 807 CCTAGAAAATGGCGAACGAAGATACGTATGTTTCCCCATTTCTTACGATCGAA-TTGGCA 865
|||| |||||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 648 CCTAAAAAATGGCGAACGAAGATACGTATATTTCCCCATTTCTTACGGTC-AACTTGGCA 706
Query 866 ATGATAAACGATCAATCTTTGCAAATGGATCGCTTTATTGC--GC----G---G--GTGG 914
|||||||| ||||||||||||||||||||||||||||||| || | | || |
Sbjct 707 ATGATAAAAGATCAATCTTTGCAAATGGATCGCTTTATTGGTTGCCAAAGCCAGACGTTG 766
Query 915 -TAAT-AC--TAGTAAACTAATAAAGCTGGCAGCAATAGATCTCCACACAGAAACATTTC 970
| | || || | ||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 767 ATTTTTACACTAATCAACTAATAAAGCTGGCAGCCATCGATCTTCACACAGAAACATTTC 826
Query 971 GTTATGTGTCACTACCGACTTGGTACACCAAAGAATCCAAAAGTGTGTACTTGTGGAGTC 1030
|||||||| ||||||||| ||||||||||||| | | ||||||||||||||| |||||||
Sbjct 827 GTTATGTGCCACTACCGAGTTGGTACACCAAATACTGCAAAAGTGTGTACTTATGGAGTC 886
Query 1031 TAAAAGATAGTTTATGTATATCTGAT 1056
||||||||||||||||| ||||||||
Sbjct 887 TAAAAGATAGTTTATGTGTATCTGAT 912
Score = 274 bits (148), Expect = 2e-72
Identities = 193/213 (91%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 1068 AGTGTGTAAGTGGGCAAAGATTTTTTCAGTTAATATCTTAAGCACCAAGTGTTTAGACGC 1127
|||||| ||||||| |||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 964 AGTGTG-AAGTGGGAAAAGATGTTTTCAGTTAATATCTTAAGCACGAATTGTTTAGACGC 1022
Query 1128 AAACTTTTGGAAGCTCAGTCTAGCTGCTTATTATTTTAGGTCGACAGGAAGAAATCCAGC 1187
|||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1023 AAACTTTTGGAAGCTCTGTCTAGCTGCTTATTATTTTAGGTCGACCGGAAGAGATCCAGC 1082
Query 1188 TAATAATAATCCTTTAGATCAAATCAAGTCCCCGATGATCACTGCAGCACCGTTTTGTAT 1247
|||||||| | ||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 1083 TAATAATA--C-TTTAGATCAG-----GTCCCCGATGATCACTGCACCAACGTTTTGTAT 1134
Query 1248 ACGGAGAGATTGGGTTCTTCGGTCTAGTTTCAT 1280
||||||| |||||||||||||||||||||||||
Sbjct 1135 ACGGAGAAATTGGGTTCTTCGGTCTAGTTTCAT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5