BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486743
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62390.1 | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | c... 2523 0.0
> AT3G62390.1 | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 |
chr3:23087017-23089206 REVERSE LENGTH=1750
Length=1750
Score = 2523 bits (1366), Expect = 0.0
Identities = 1557/1647 (95%), Gaps = 22/1647 (1%)
Strand=Plus/Plus
Query 21 aaGATGGAGAGACAAAGGAGCATCTCTGTGAAGTCCACGAGAGTCTTAGCATTCATCATC 80
||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 62 AAGATGGAGAGACAAAGAAGTTTCTCTGTGAAGTCCACAAGAGTCTTAGCATTCATCATC 121
Query 81 ACAACAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTAATCAAATCT 140
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 122 ACAATAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTACTCAAATCT 181
Query 141 AACTCTTCTCTTTACCCAACACCAGACTCTAACTTCCAGATCGATTTAAGTCCT-TTGGC 199
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 182 AACTCTTCTCTTTACCCAACACCAGAAGCTAACTTCCAGATCGATTTAAGCCCTATT-GC 240
Query 200 CGCCGTCTCCGATTCTTCAGTTTCTCCTCAAGCAAGCCCGGTTCCGATCTCTACCCATTT 259
|||| | ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 241 CGCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGTCCGATTCTGATCTCTACCCATTT 300
Query 260 CAATTCGCCCGAAAACACTTCCGGGTCTTCAAAAATTTCAGTTTTTGAGCAGAAGATTCG 319
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 301 CAATTCACCCGAAAACACTTCCGGGTCTTCAAAAATTTCTGTTTTTGAGCAGAAGATTAG 360
Query 320 CGGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGGT 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CGGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGAT 420
Query 380 TGAAGTTTCGAGCAACAATGGTG-AG--GAGAAGACAAAGAAGAGAATCGAAGAGTGTGA 436
|||| || ||||||||||||||| || |||||||| |||||||||||||||| |||||
Sbjct 421 TGAACTTCCGAGCAACAATGGTGAAGATAAGAAGACAGAGAAGAGAATCGAAGAATGTGA 480
Query 437 TGTTACGAAAGGGAAGTGGGTTTACGATAGCGACTATCCATTGTACACAAATGCGTCTTG 496
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 481 TGTTACGAAAGGGAAGTGGGTTTACGATAGTGATTATCCATTGTACACAAATGCGTCTTG 540
Query 497 TCCTTTTATCGATGAAGGATTTAGTTGTCAAAGCAATGGACGATTGAATCTTAATTACAT 556
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 541 TCCTTTTATCGATGAAGGATTTGGTTGTCAAAGCAATGGAAGATTGGATCTTAATTACAT 600
Query 557 GAATTGGAGATGGGAGCCTCAAGATTGTGATGCTCCCAGGTTCAATGCTACAAAAATGCT 616
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 601 GAATTGGAGATGGGAGCCTCAGGATTGTCATGCTCCCAGGTTCAATGCTACAAAGATGCT 660
Query 617 GGAAATGATTAGAGGGAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAGTG 676
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 GGAAATGATTAGAGGCAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAATG 720
Query 677 GGAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTCTACGAAAT 736
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 GGAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTATACGAAA- 779
Query 737 C-CACAACCGAAGAATCACAAAAGAGAAAGGGAATTACAGCTTCCGTTTCGTGGATTATA 795
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 CGCACAACCGAAGAATCACCAAAGAGAAAGGGAATTATAGCTTCCGTTTCGTGGATTATA 839
Query 796 AATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAG 899
Query 856 GAAAGAAGAGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCGAGATGGA 915
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 GAAAGAAGCGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCCAGATGGA 959
Query 916 AAGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAAT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAAT 1019
Query 976 CGGGGGTCAACTATTACCAAGAAGGAGACCAGATTCATCCCAAGCTCGATGTATCAACCG 1035
| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1020 CAGGGGTCAACTACTACCAAGAAGGAGACCTGATTCATCCCAAACTCGATGTATCAACCG 1079
Query 1036 CTTTCAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGACCCGAAGA 1095
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 CTTTTAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGATCCGAAGA 1139
Query 1096 AAACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACT 1199
Query 1156 CAGGAGGTCACTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCGAGTTACT 1215
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1200 CAGGAGGTCATTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCAAGTTACT 1259
Query 1216 CGAGCAAAAAGTCCATTGTTGAGGAAGTACTGAAGCAGATGAGAACACCGGTAACCCTCT 1275
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1260 CGAGCAAAAAGTCCATTGTTGAGGACGTACTGAAGCAAATGAGAACACCGGTAACCCTCT 1319
Query 1276 TGAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCACCCGTCTATTTACGGAACAA 1335
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1320 TGAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCATCCTTCTATTTACGGAACAA 1379
Query 1336 AACCCGAAAACCGGCGTTCAAAAGCTGTCCAAGATTGCAGTCATTGGTGTCTCCCTGGTG 1395
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1380 AACCCGAAAACCGGCGTTCAAGAGCTGTCCAAGATTGCAGCCATTGGTGTCTCCCTGGTG 1439
Query 1396 TTCCTGATACATGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATAGAGT 1455
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 TTCCTGATACTTGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATACAGT 1499
Query 1456 TTACAAACTAATCATAGCTCCAGTTACTTGTTCAGAATTGTTTGTTTAATGTAGGGATGG 1515
| |||||||||||| |||||||||||| |||||| || |||||||||||||||| || |
Sbjct 1500 T-ACAAACTAATCAAAGCTCCAGTTACGTGTTCAAAA--GTTTGTTTAATGTAGGCATTG 1556
Query 1516 -TCGATCC-AGTTTaaccaaccaaaccaaaaccatattggaaaaaccactatgacaactg 1573
||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1557 CTCGATCCGA-TTTAACCAACCAAACCAAAACCATTTTGGAAAACCCACTATGACAACTG 1615
Query 1574 aaatgaaaagacaaaaaaaaaaGAACAAAGTTTTAGTTTTCCTCTGACTCACGCTGGTCC 1633
|| |||||| |||||| |||| |||| |||||||| ||||||||||||||||
Sbjct 1616 AACTGAAAATACAAAAC--------CAAA-TTTTCGTTTTCCTGTGACTCACGCTGGTCC 1666
Query 1634 CATGAATGTCAATCTCTTGGTTAATTG 1660
| |||||||||||||||||||| ||||
Sbjct 1667 CGTGAATGTCAATCTCTTGGTTCATTG 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5