BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486748
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62422.1 | Symbols: CPuORF3 | conserved peptide upstream ope... 1304 0.0
AT3G62420.1 | Symbols: ATBZIP53, BZIP53 | basic region/leucine ... 1304 0.0
> AT3G62422.1 | Symbols: CPuORF3 | conserved peptide upstream open
reading frame 3 | chr3:23091586-23092850 REVERSE LENGTH=1265
Length=1265
Score = 1304 bits (706), Expect = 0.0
Identities = 1011/1142 (89%), Gaps = 86/1142 (8%)
Strand=Plus/Plus
Query 1 CATCTTCTCCTTTAAAAGGAT-AGCCTGGTGTTACTTCATCGCCTTCTTTCGTTTGGCCT 59
||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 2 CATCTTCTCCTTTAAAAGGATAAGCTTGGTGTTACTTTATCGCCTTCTTTCGTTTGGCCT 61
Query 60 TTGAGT-TTATC--AA---TCTTCTCGATTCATCTAAGT-TT-T-G-TT------CAATT 103
|||| | |||| || | || ||| || ||| || | || | | || |||||
Sbjct 62 TTGA-TCCTATCATAAGCTTTTTTTCG-TTTATC-AA-TCTTCTCGATTCAGCCACAATT 117
Query 104 CTTGTTTCTCAGATAACTCA--T-C--T-TTTGATTCGTTTCCTTCTGTTCTGTC-CTCA 156
|||||||||||||||| ||| | | | |||||||||||||||||| ||||||| ||||
Sbjct 118 CTTGTTTCTCAGATAATTCATCTCCTTTCTTTGATTCGTTTCCTTCTCTTCTGTCACTCA 177
Query 157 GATCTAGATCTAGATCTA-G---tttt-ttt-t--t------ttt-G-TT-----C---- 191
|||||||||||||||||| | |||| ||| | | ||| | || |
Sbjct 178 GATCTAGATCTAGATCTAGGTTTTTTTCTTTCTCATCGGAAATTTGGCTTAGAGGCTTGT 237
Query 192 --TGATCTAGGGTTTGGTTTTTGGGAATTTTGAAGaaaaaaa-aaTATTAGGAATGATTC 248
|||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 238 TTTGATCTAGGGTTTGGTTTTTGGGAATTTTGAA-AAAAAAACAAAATTAGGAATGAATC 296
Query 249 TATGAGCTACTCAATCCTGTTTCGTCGGATTCGAATTCTACACTCTTTCTCCGTCGTTTA 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATGAGCTACTCAATCCTGTTTCGTCGGATTCGAATTCTACACTCTTTCTCCGTCGTTTA 356
Query 309 CCTCTACTACACATACGTTTTCTCATGAAATAATCGTTCTCGATCTCATCTTTTTCG-TT 367
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 357 CCTCTACTACACCTACGTTTTCTCATGAAGTAATCGTTCTCGATCTCA--GTTTTCGTTT 414
Query 368 TTGATCTAACTTATTCTTTGATAGATTTAGAATTCGGGGA-----A-TTTG-GTTTTT-A 419
|||||||||||||||||||||||||||||||| ||||||| | ||| |||||| |
Sbjct 415 TTGATCTAACTTATTCTTTGATAGATTTAGAAATCGGGGATTTTCAGATTGTGTTTTTGA 474
Query 420 TAGG-----A-A-TATAATATTTCTAGAAGAAGAAG---AATATTATATTGATTTTAATT 469
||| | | | ||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 475 GAGGTTTTTATAGGAAAATATCTCTAGAAGAAGAAGAATAATATTATATTGATTTTAA-T 533
Query 470 TTTGGTGAGAACAAGTCAAAAAGTCAAC--GAAATGGGGTCGTTGCAAAGGCAAACAAGT 527
||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 534 TTTGGTGAGAAGAAGTCAAAAAGTCAACGAGAAATGGGGTCGTTGCAAATGCAAACAAGT 593
Query 528 CCTGAATCCGATAATGATCCGAGATACGCGACGGTGACGGATGAGAGGAAGAGGAAGAGA 587
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 594 CCTGAATCCGATAATGATCCGAGGTACGCCACGGTGACGGATGAGAGGAAGAGGAAGAGA 653
Query 588 ATGATCTCTAACAGAGAATCTGCTCGTAGATCAAGGATGAGGAAACAGAAGCAGCTTGGT 647
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 654 ATGATCTCTAACAGAGAATCTGCTCGGAGGTCAAGGATGAGGAAACAGAAGCAACTTGGT 713
Query 648 GATTTGATCAATGAAGTTACTCTTCTCAAGAATGATAACGCTAAAATCACCGAGCAAGTT 707
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 714 GATTTGATCAACGAAGTCACTCTTCTCAAGAATGATAACGCTAAAATCACTGAGCAGGTT 773
Query 708 GATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGAGCACAG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 GATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGGGCACAG 833
Query 768 GCTTTGGAGTTAACGGATAGGTTAAGATCATTGAACTCTGTGCTTGAGATGGTTGAAGAA 827
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 GCTTCGGAGTTGACGGATAGGTTGAGATCATTGAACTCTGTGCTTGAGATGGTTGAAGAA 893
Query 828 ATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAAAACCCTTGGCAG 887
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 ATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAGAACCCTTGGCAG 953
Query 888 ATGCCTTGTCCAATGCAGCCAATCAGGGCTTCTGCTGATATGTTTGATTGCTGAGGATG- 946
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 954 ATGCCTTGTCCAATGCAACCAATCAGAGCTTCTGCTGATATGTTTGATTGCTGAAGATGG 1013
Query 947 ATTCATTCCTATCTTAAGGATCCACAAA-GAAGCATTGAGATCGAGTCTTTGGTCTGTTT 1005
|| |||| ||||| ||||||| | ||| ||||||||||| |||||||||||||||||||
Sbjct 1014 ATG-ATTCATATCTGAAGGATCAA-AAATGAAGCATTGAGTTCGAGTCTTTGGTCTGTTT 1071
Query 1006 TACTTACTGTCCTTGTTGTAACAATTAGTGTGTCATTGGTCAAT-GAGTCCTGTGTTGTC 1064
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 1072 TACTTACTGTCCTTGTTGTAACAATTAGTGTGTCATTGGTGAATTGAGTCTTGTGTTGTC 1131
Query 1065 AA 1066
||
Sbjct 1132 AA 1133
> AT3G62420.1 | Symbols: ATBZIP53, BZIP53 | basic region/leucine
zipper motif 53 | chr3:23091586-23092850 REVERSE LENGTH=1265
Length=1265
Score = 1304 bits (706), Expect = 0.0
Identities = 1011/1142 (89%), Gaps = 86/1142 (8%)
Strand=Plus/Plus
Query 1 CATCTTCTCCTTTAAAAGGAT-AGCCTGGTGTTACTTCATCGCCTTCTTTCGTTTGGCCT 59
||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 2 CATCTTCTCCTTTAAAAGGATAAGCTTGGTGTTACTTTATCGCCTTCTTTCGTTTGGCCT 61
Query 60 TTGAGT-TTATC--AA---TCTTCTCGATTCATCTAAGT-TT-T-G-TT------CAATT 103
|||| | |||| || | || ||| || ||| || | || | | || |||||
Sbjct 62 TTGA-TCCTATCATAAGCTTTTTTTCG-TTTATC-AA-TCTTCTCGATTCAGCCACAATT 117
Query 104 CTTGTTTCTCAGATAACTCA--T-C--T-TTTGATTCGTTTCCTTCTGTTCTGTC-CTCA 156
|||||||||||||||| ||| | | | |||||||||||||||||| ||||||| ||||
Sbjct 118 CTTGTTTCTCAGATAATTCATCTCCTTTCTTTGATTCGTTTCCTTCTCTTCTGTCACTCA 177
Query 157 GATCTAGATCTAGATCTA-G---tttt-ttt-t--t------ttt-G-TT-----C---- 191
|||||||||||||||||| | |||| ||| | | ||| | || |
Sbjct 178 GATCTAGATCTAGATCTAGGTTTTTTTCTTTCTCATCGGAAATTTGGCTTAGAGGCTTGT 237
Query 192 --TGATCTAGGGTTTGGTTTTTGGGAATTTTGAAGaaaaaaa-aaTATTAGGAATGATTC 248
|||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 238 TTTGATCTAGGGTTTGGTTTTTGGGAATTTTGAA-AAAAAAACAAAATTAGGAATGAATC 296
Query 249 TATGAGCTACTCAATCCTGTTTCGTCGGATTCGAATTCTACACTCTTTCTCCGTCGTTTA 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATGAGCTACTCAATCCTGTTTCGTCGGATTCGAATTCTACACTCTTTCTCCGTCGTTTA 356
Query 309 CCTCTACTACACATACGTTTTCTCATGAAATAATCGTTCTCGATCTCATCTTTTTCG-TT 367
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 357 CCTCTACTACACCTACGTTTTCTCATGAAGTAATCGTTCTCGATCTCA--GTTTTCGTTT 414
Query 368 TTGATCTAACTTATTCTTTGATAGATTTAGAATTCGGGGA-----A-TTTG-GTTTTT-A 419
|||||||||||||||||||||||||||||||| ||||||| | ||| |||||| |
Sbjct 415 TTGATCTAACTTATTCTTTGATAGATTTAGAAATCGGGGATTTTCAGATTGTGTTTTTGA 474
Query 420 TAGG-----A-A-TATAATATTTCTAGAAGAAGAAG---AATATTATATTGATTTTAATT 469
||| | | | ||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 475 GAGGTTTTTATAGGAAAATATCTCTAGAAGAAGAAGAATAATATTATATTGATTTTAA-T 533
Query 470 TTTGGTGAGAACAAGTCAAAAAGTCAAC--GAAATGGGGTCGTTGCAAAGGCAAACAAGT 527
||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 534 TTTGGTGAGAAGAAGTCAAAAAGTCAACGAGAAATGGGGTCGTTGCAAATGCAAACAAGT 593
Query 528 CCTGAATCCGATAATGATCCGAGATACGCGACGGTGACGGATGAGAGGAAGAGGAAGAGA 587
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 594 CCTGAATCCGATAATGATCCGAGGTACGCCACGGTGACGGATGAGAGGAAGAGGAAGAGA 653
Query 588 ATGATCTCTAACAGAGAATCTGCTCGTAGATCAAGGATGAGGAAACAGAAGCAGCTTGGT 647
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 654 ATGATCTCTAACAGAGAATCTGCTCGGAGGTCAAGGATGAGGAAACAGAAGCAACTTGGT 713
Query 648 GATTTGATCAATGAAGTTACTCTTCTCAAGAATGATAACGCTAAAATCACCGAGCAAGTT 707
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 714 GATTTGATCAACGAAGTCACTCTTCTCAAGAATGATAACGCTAAAATCACTGAGCAGGTT 773
Query 708 GATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGAGCACAG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 GATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGGGCACAG 833
Query 768 GCTTTGGAGTTAACGGATAGGTTAAGATCATTGAACTCTGTGCTTGAGATGGTTGAAGAA 827
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 GCTTCGGAGTTGACGGATAGGTTGAGATCATTGAACTCTGTGCTTGAGATGGTTGAAGAA 893
Query 828 ATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAAAACCCTTGGCAG 887
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 ATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAGAACCCTTGGCAG 953
Query 888 ATGCCTTGTCCAATGCAGCCAATCAGGGCTTCTGCTGATATGTTTGATTGCTGAGGATG- 946
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 954 ATGCCTTGTCCAATGCAACCAATCAGAGCTTCTGCTGATATGTTTGATTGCTGAAGATGG 1013
Query 947 ATTCATTCCTATCTTAAGGATCCACAAA-GAAGCATTGAGATCGAGTCTTTGGTCTGTTT 1005
|| |||| ||||| ||||||| | ||| ||||||||||| |||||||||||||||||||
Sbjct 1014 ATG-ATTCATATCTGAAGGATCAA-AAATGAAGCATTGAGTTCGAGTCTTTGGTCTGTTT 1071
Query 1006 TACTTACTGTCCTTGTTGTAACAATTAGTGTGTCATTGGTCAAT-GAGTCCTGTGTTGTC 1064
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 1072 TACTTACTGTCCTTGTTGTAACAATTAGTGTGTCATTGGTGAATTGAGTCTTGTGTTGTC 1131
Query 1065 AA 1066
||
Sbjct 1132 AA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5