BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486755
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62550.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1133 0.0
> AT3G62550.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:23135984-23137173 FORWARD LENGTH=798
Length=798
Score = 1133 bits (613), Expect = 0.0
Identities = 738/796 (93%), Gaps = 18/796 (2%)
Strand=Plus/Plus
Query 1 GTAAAAATTAC-TTAAGAGATAATGTCTACAAATATCTAAATAAAAACACTTAATTCC-A 58
||||||||||| ||| |||| ||||| ||||||||||||| ||||||||||||||| |
Sbjct 1 GTAAAAATTACACAAAG-GATAGTGTCTGCAAATATCTAAATGAAAACACTTAATTCCAA 59
Query 59 AATAGGGAAATCAAGTGGGTTTTGCCTAGCTAGTTGTATAAATAGAAACACAATCGTAAT 118
||| | |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 60 AAT-GAGAAATCAAGTGGGTTTTGCCTAGCTAATTGTATAAATAGTAACACAATCATAAT 118
Query 119 CTCTTCTTCCATCGA-GCCTTCTTCATAAGATATTTCTTCTCTAATAATTGAAAGCAAAA 177
||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 CTCTTCTTCCATC-AGGTCTTCTTCATAATATATTTCTTCTCTAATAATTGAAAGCAAAA 177
Query 178 GAAATCAG-TAttttttttAGAAAGGTAAAGAAATGGAGGAAACAAAGGAGAGAAAGATA 236
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAAAACAGTTTTTTTTTTTAGAAAGGTAAAGAAATGGAGGAAACAAAGGAGAGAAAGATA 237
Query 237 GTAGTAGCAGTGGACGAAAGCGAAGAGAGCATGGAAGCTCTTTCATGGAGTCTTGACAAT 296
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GTAGTAGCAGTAGACGAAAGCGAAGAGAGCATGGAAGCTCTGTCATGGAGTCTTGACAAT 297
Query 297 CTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTAAAGCCCCCTCTTCCC 356
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 CTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTCAAGCCCCCTCTTCCC 357
Query 357 GTTTACTCTTCCCTTGACGCCGCAGGGTTTATAGTGACCGGAGACCCGGTTGCAGCTTTG 416
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 GTTTACTCTTCCCTCGATGCCGCAGGGTTTATAGTGACAGGAGACCCGGTTGCAGCTTTG 417
Query 417 AAGAAGTATGAATACGAGCTGGTGGAATCGGTCATGGCTCGATCTCGAACCGTGTACCAA 476
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 418 AAGAAGTATGAATACGAGCTCGTGGAATCGGTCATGGCTCGGTCTCGAACCGTGTACCAA 477
Query 477 GATTATGAATCCGATATTAATATAGAAAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTT 536
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 GATTATGAGTCTGATATTAATATAGAGAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTT 537
Query 537 ATATGCAAGGCAGTTGAGAAACTTAGAGCTGATATGTTAGTAATGGGCACTCATGACTAT 596
|||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 ATATGCAACGCAGTTCAGAAACTTAGAGTTGATATGTTAGTAATGGGCACTCATGACTAT 597
Query 597 GGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAG 657
Query 657 TGTCCTGTGATTATTGTCAAGAAGCAACCTGAAGATAATTAAA-T-ATAACTCTTGTGAT 714
||||||||| |||| |||||||||||| || ||||||||||| | ||| ||| ||
Sbjct 658 TGTCCTGTGGTTATCGTCAAGAAGCAAGCTCAAGATAATTAAGCTCATATGA-TTGC-AT 715
Query 715 TGTGTATATGTTTCGAAAGAACTGATGTAACATTT-AA--A-TCTTCGTATATTGCAATA 770
|||||||||||||||||||||||| ||||||| || || | ||||||||| || |||
Sbjct 716 TGTGTATATGTTTCGAAAGAACTGGTGTAACACTTGAATCAATCTTCGTAT---GCGATA 772
Query 771 ATAAAATACACAACGG 786
|||||||||| |||||
Sbjct 773 ATAAAATACATAACGG 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5