BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486757
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2558 0.0
> AT3G62570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:23142485-23144609 FORWARD LENGTH=1836
Length=1836
Score = 2558 bits (1385), Expect = 0.0
Identities = 1632/1753 (93%), Gaps = 10/1753 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTTTTCTCAAATCTTGGAGGAGAAGAAGCAAAGAATTAGACTACTCTGCAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 72 TCTCTCTCTTTTCTCAAATCTTGGAGGAGAAGAAGCAAAGAATTAGACTACTCTG---CA 128
Query 61 ACAATGGCGGTTTATCCTGTCCTTAACGGCGACAAGAAGCATTGGTGGTTCACTCACAAG 120
|||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 129 ACAATGGCTATTTATTCTGTCCATAACGGCGACAAGAAACATTGGTGGTTCACTCACAAG 188
Query 121 AAGATTGTTGACAAGTACATTCAGGACGCAAGGTCTTTAATGTCGAGTGAGGAGCAAAAC 180
||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 189 AAGATTGTTGATAAGTACATTAAGGACGCAAGATCTTTAATGGAGAGTGAGGAGCAAAAC 248
Query 181 GACGTTGCTTCAGCCATTCATTTACTTGACGCGGCGTTATCAATATCGCCGCGTTCGGAA 240
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 249 GACGTTGCTTCAGCCATTCATTTACTAGACGCGGCTTTATCAATATCCCCGCGTTCGGAA 308
Query 241 ACTGCGTTAGAACTTAAAGCCAGATCTTTGCTTTTTCTTCGTCGCTTCAAAGATGTAGTT 300
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 309 ACTGCGTTAGAACTTAAAGCCAGATCTTTGCTCTTTCTACGTCGCTTCAAAGATGTAGTT 368
Query 301 AATATGCTTCAAGATTATATTCCAAGCCTCAAGCTCACCGTGAACGAGGAAGATGGATCT 360
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 369 GATATGCTTCAAGATTATATCCCAAGCCTCAAGCTTGCCGTGAACGAGGAAGATGGATCT 428
Query 361 TATTCATACGAAGGCAGc-tctttctcttcctcctctgctcagctctcccggaaacttct 419
|||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 429 TATTCATACGAAGG-TTCTTCTTACTCTTCCTCCTCTTCTCAGCTCTCCCGGAAACTTCT 487
Query 420 ctccaactcatctcctcGCCGTGACTCCTCCTTCAAGTGCTTCTCTGTTTCTGACTTGAA 479
||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 488 CTCTGACTCATCTCCTCGCCGTGACTCATCCTTCAAGTGCTTCTCTGTTTCTTACCTGAA 547
Query 480 AAATAAAATTATGGCTGGGATTTGTAAAAACCGCGATAAAGATAAACAATGGAGATATGT 539
||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 548 AAAGAAAATTATGGCTGGGATTTGTAAAAATCGCGATCAAGATAAACAATGGAGATACGT 607
Query 540 TGTTTTAGGACAAGCTTGTTGCCACCTAGGATTAATGGAGGACGCATTGATTCTTCTTCA 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 608 TGTTTTAGGACAAGCTTGTTGCCACCTAGGATTAATGGAGGACGCATTGGTTCTTCTTCA 667
Query 600 AACCGGAAAACGCCTCGCAACCGCCGAGTTCCGCCGTTTAAGTGTAAGCTTGGCAGATGA 659
|||||||||||| |||||||| | ||||||||||||| |||||||||||||| |||||||
Sbjct 668 AACCGGAAAACGTCTCGCAACAGTCGAGTTCCGCCGTCTAAGTGTAAGCTTGTCAGATGA 727
Query 660 TAGCGTCTCTCTCCTCCTCTCCGAa---tcatcatcatcatcatcatcCTCTTATGCTTA 716
||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 728 TAGCGTCTCTCTCCTCCTCTCTGAATCGTCATCATCATCATCCTCATCCTCTTATGCTTT 787
Query 717 TCCTCCACGCAAACTCTCCGAATGCGAAACCGTCACTAACCTTCTCGCCCACACAAAAAA 776
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 788 TCCTCCACGCAAAGTCTCCGAATGCGAAACCGTCACTAACCTTCTCGCCCACACGAAAAA 847
Query 777 TCTCCTCCGTCGTCGCGCCGCCGGTTTCGCCGCCTTTGACGCTGGACTATTCTCCGACTC 836
||||||||| |||||| ||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 848 TCTCCTCCGGCGTCGCTCCGCCGGATTCGCCGCCTTTGACGCTGGACTTTTCGCCGACTC 907
Query 837 CATCCGTCACTTCTCCAAAATCCTCGACAGTCGTCGTCGTCCCGCGCCACAAGGATTCCT 896
|| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 908 GATACGTCACTTCTCCAAAATTCTCGACGGTCGTCGTCGTCCCGCGCCACAAGGATTCCT 967
Query 897 CGCCGATTGCTATATGCACCGCGCCGCCGCTTATAGATCCGCCGGTAAAATCGCGGAAGC 956
||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 968 CGCTGATTGCTATATGCACCGCGCCGCCGCTTACAAATCCGCCGGGAAAATCGCGGAAGC 1027
Query 957 GATCGCCGATTGTAACAAAACCTTAGCTCTTGAGCCGTCGTGCATTCACGCGTTGGAGAC 1016
||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 1028 GATCGCCGATTGTAATAAAACCTTAGCTCTTGAGCCGTCGTGTATCCATGCGTTGGAGAC 1087
Query 1017 TAGAGCCGCTCTTTTGGAAACAGTTCGGTGTCTACCGGATTCGCTTCACGATTTAGAGCA 1076
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TAGAGCCACTCTTTTGGAAACGGTTCGGTGTCTACCGGATTCGCTTCACGATTTAGAGCA 1147
Query 1077 CTTGAAGATACTCTACAACACCATCTTACGTGATCGGAAACTTCCCGGACCACCGTGGAA 1136
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TTTGAAGATACTCTACAACACTATCTTACGTGATCGGAAACTTCCCGGACCACCGTGGAA 1207
Query 1137 ACGACACAATGTGAAATACAGAGAAATTCCGGGAAAATTATGCGAATTAACGACGAAATC 1196
|||||||||||||||||||||||| || |||||||| ||||||||| | |||||||||||
Sbjct 1208 ACGACACAATGTGAAATACAGAGAGATACCGGGAAAGTTATGCGAACTGACGACGAAATC 1267
Query 1197 GAAGAAACTGAAAGCAAAAATCGCGAATGGAGAAATCGGTGACGTTGATTATTACGGATT 1256
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1268 GAAGAAACTGAAAGCAAAAATGGCGAATGGAGAAATCGGAAACGTTGATTATTACGGATT 1327
Query 1257 GGTCGGAGTTAGACGCGGTTGCACGAGATCGGAGCTTGATCGAGCAAATCTCTTGCTCTG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GGTCGGAGTTAGACGCGGTTGCACGAGATCGGAGCTTGATCGAGCAAATCTCTTGCTCTG 1387
Query 1317 TCTCAGGCATAAACCTGACAAGGCTTTAGCATTCATCGAACGCTGCGATTTCTTCGATCA 1376
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1388 TCTCAGGCATAAACCGGACAAGGCTTTAGCATTCATGGAACGTTGCGATTTCTTCGATCA 1447
Query 1377 GAACGAGATTAGTTCCGTTAAAGATCGAGCGAAGATGTCTTCTTTGTTGCTTTACCGATT 1436
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 GAGTGAGATTAGTTCCGTTAAAGATCGAGCGAAGATGTCTTCTTTGTTGCTTTACCGATT 1507
Query 1437 GATTCAGAGAGGTTATTCAGTTTTGGCGGCAACGATAGCAGAGGAAGAACAGAGGAAGAA 1496
|||||||||||||||| ||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct 1508 GATTCAGAGAGGTTATACAGCTTTGGCGGCAGCGATAGCTGAGGAGGAACAGAGGAAGAA 1567
Query 1497 GATGATGGCGTTGACTCAAACGTCAACGAAAACGGTTGAAGAGCACGAACCGGTTGAAAA 1556
|||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 1568 GATGATGGTGTTGACTCAAATGTCAACGAAAACGGTTGAAGAACATGAACCGGTTGAAAA 1627
Query 1557 -TCCCGGTACAATAAAGATAACCGGTTTCGTAGATATTAAACCGGGAAATTCAAACGCGT 1615
||| ||| |||| | |||||| ||| | ||| ||||||||||| ||||| |||||||
Sbjct 1628 ATCC-GGTTCAATTACTTTAACCGATTTTGCAGAAATTAAACCGGGGAATTCGAACGCGT 1686
Query 1616 TTCAAGGAGTTTTCTGCCGAGATCTTGCCGCCGTTGGGAGTTTATTATCTCGAACCGGTT 1675
|||||||||||||||||||||||||| || ||||||||||| |||||| | ||||| |
Sbjct 1687 ACCAAGGAGTTTTCTGCCGAGATCTTGCTGCTGTTGGGAGTTTGTTATCTAGGACCGGAT 1746
Query 1676 TTAACCAACCGATTCCAATGAAATACGATGCAATCAGTTGTTAACCGAGAATTATAGTTT 1735
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 1747 TTAACCAACCGATACCAATGAAATACGATGCGATCAGTTGTTAACCGGGAATTTTAGTTT 1806
Query 1736 GTGTATAAGTAAG 1748
|| ||||| ||||
Sbjct 1807 GTATATAATTAAG 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86445338490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5