BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486758
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62580.1 | Symbols: | Late embryogenesis abundant protein (... 1303 0.0
> AT3G62580.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr3:23146828-23147951 FORWARD LENGTH=961
Length=961
Score = 1303 bits (705), Expect = 0.0
Identities = 801/847 (95%), Gaps = 8/847 (1%)
Strand=Plus/Plus
Query 1 ACCCAAACTCAATTCGACGTTAAGAAAACGTGTCGCGTCTTCTGGTCTCAGCTACCAAAT 60
||| ||||||||||||||||| |||||||||||||| ||||||| |||||||| | ||||
Sbjct 8 ACCGAAACTCAATTCGACGTTTAGAAAACGTGTCGCTTCTTCTGATCTCAGCTTCAAAAT 67
Query 61 TCGAGAAAGAGTGATC-GG-AAAACAATCATCGGCGATGGGTTGGTATACCAGTTTCATA 118
|||||||||||||||| || |||| |||||||||| ||||||||||||||||||||| ||
Sbjct 68 TCGAGAAAGAGTGATCGGGAAAAATAATCATCGGCAATGGGTTGGTATACCAGTTTCTTA 127
Query 119 GCAGCGTTGGCGTTCTTAGCCGTCGGAGTTATATTCTCACCGGAGACATTCGGATCGCTG 178
| || | |||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 128 GTAGTGGTGGCGTCCTTAGCCGTCGGAGTTATATTCTCGCCGGAGACATTCGGATCGTTG 187
Query 179 TCGAATGGAGAGAATTCGGAGAAGATTTCGATATTCCTGAAGCTCGCTCATCTACTCAGT 238
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 188 ACGAATGGAGAGAATTCGGCGAAGATTTCGATATTCCTGAAGCTAGCTCATCTACTCAGT 247
Query 239 TTCGCTACAGCTTGGGGAGCTGCTCTCTGGGCTACCTTCATCGGAGGAATCATCATGTTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TTCGCTACAGCTTGGGGAGCTGCTCTCTGGGCTACCTTCATCGGAGGAATCATCATGTTC 307
Query 299 AAGAATTTACCGAGGCATCAGTTTGGTAATCTTCAGAGCAAGTTGTTTCCAGCTTACTTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AAGAATTTACCGAGGCATCAGTTTGGTAATCTTCAGAGCAAGTTGTTTCCAGCTTACTTC 367
Query 359 ACTTTGGTTGGTTCTTGCTGCGCAATTTCACTCTCTGCTTTTGGTTATTTGCATCCATGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 ACTTTGGTTGGTTCTTGCTGCGCAATTTCACTCTCTGCTTTTGGTTATTTGCATCCATGG 427
Query 419 AAGTCATCTTCTACGGTCGACAAGTATCAGCTAGGCTTTCTCCTATCCGCTTTTGCTTTC 478
|||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||
Sbjct 428 AAGTCATCTTCTACGGTCGAGAAATATCAGATAGGGTTTCTCCTATCCGCTTTTGCTTTC 487
Query 479 AATCTCACCAATTTGTTTGTCTTCACTCCCATGACCATCAATATGATGAAGGAAAGGCAC 538
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 488 AATCTCACCAATTTGTTTGTCTTCACTCCCATGACCATCGATATGATGAAACAAAGGCAC 547
Query 539 AAAGTAGAGAGAGAAAACAACATTGGAGATGAGGTTGGTTGGTCCAAGAACAGAGAAAAG 598
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 548 AAAGTAGAGAGGGAAAACAACATTGGAGATGAAGTTGGTTGGTCCAAGAACAGAGAAAAG 607
Query 599 GCAAAGACCATCCCAAAGCTAGCTGCTATGAACAAGAAGTTTGGAATGATTCACGGGTTG 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCAAAGAGTATCCCAAAGCTAGCTGCTATGAACAAGAAGTTTGGAATGATTCACGGGTTA 667
Query 659 TCATCGCTTGCTAACAT-TTTGTCATTTGGCAGCCTTGCTATGCATTCTTGGTATCTAGC 717
||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 668 TCATCCCTTGCTAACATCTTT-TCATTTGGAAGCCTTGCTATGCATTCTTGGTATCTAGC 726
Query 718 AGGGAAGTTGAATCTTTAGTTTCCTC---AATACTCATCTTGTCACAAAGGTCTGATCTT 774
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 727 TGGGAAGTTGAATCTCTAGTTTCCTCCTCAATACTCATCTTGTCACAAAGGTCTGACCTT 786
Query 775 TTATGCCCCCCTTATTGAATAAATCTCTTGCATTTCCTCGCCAATCCCTTTGTAAGATTA 834
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TTACGCCCCC-TTAATGAATAAATCTCTTGCATTTCCTCGCCAATCCCTTTGTAAGATTG 845
Query 835 TGTCAGA 841
|||||||
Sbjct 846 TGTCAGA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5