BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486759
Length=2167
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62590.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 3120 0.0
> AT3G62590.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:23147918-23150352 REVERSE LENGTH=2188
Length=2188
Score = 3120 bits (1689), Expect = 0.0
Identities = 2032/2192 (93%), Gaps = 45/2192 (2%)
Strand=Plus/Plus
Query 1 AGATTTGATCGGACGAGGAAGCTGAGAAGATACCAAAAAACGACAACAGATTCATTCAAA 60
|||||||||||||||||||||||||||| | | | ||||||||||| |||||||||||||
Sbjct 1 AGATTTGATCGGACGAGGAAGCTGAGAAAAAAAC-AAAAACGACAAGAGATTCATTCAAA 59
Query 61 CTTGCACGCCAACGCCGGATTATTCCCGGTGTATACGTATTTTATACGGGTCTATTT--- 117
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CTTGCACGCCAACGCCGGATTATTCCCGGTGTATACGTATTTTATACGGTTCTATTTAGG 119
Query 118 ----A-CTCCATTA-ACGAAGAACAAGAGGAAATTTGAAGGAAAGAGTTTTGGTTAAGTG 171
| | | | |||||| |||||||||||| |||||||||||||| ||| |
Sbjct 120 AAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTTTAAGGAAAGAGTTTTTGTT-TGAA 178
Query 172 TTGTTAAATGGAGGGTGTTTTCTTAAAAATGTCGGTGCAAGGAGTTGTATCTCCGATGAT 231
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 179 TTG--GAATGGAGGGTGTTTTCTTAAAAATGTCGGTGGTTGGA---GTATCTCCGATGAT 233
Query 232 TCCGGTGGGGCCTTCTTCTTTCATACGCGCCATCGGAGGCTCTGTTGAGGAGAAATCAAC 291
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 234 ACCGGTGGGACCTTCTTCTTTCATATGCGCCATCGGAGGCTCTGTTGAGGAGAAATCAAC 293
Query 292 GGCTGGTTCTCTGCCGCGTTGGGTTTCACGTCGACGTCCTCGTCCGCTTGAGTTTCTTCG 351
||||| ||||||||||||||||||||| | ||| |||| |||||||||||||||||||||
Sbjct 294 GGCTGCTTCTCTGCCGCGTTGGGTTTCCCTTCGTCGTCTTCGTCCGCTTGAGTTTCTTCG 353
Query 352 GATCGGTGGTAAGAGAGATGAGAAGGGACCGGTAAGAGACGACGCCGCCGTTTTGTTGGA 411
|||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||
Sbjct 354 GATCGGTGGTAAGAGAGAGGAAAAGGGAACGGTAAGAGACGACGACGCCGTTTTGTTGGA 413
Query 412 GAG-A--GA--GG-AGCGGGTCGGAAACGATAACGGAAACTGGGTTTTGAAAATTTTGGA 465
||| | || || | || || ||||||||||||||||||||||||||||||||||||
Sbjct 414 GAGAAGGGACCGGAACCGCAACGAAAACGATAACGGAAACTGGGTTTTGAAAATTTTGGA 473
Query 466 AGTTGGATCAATCTGGAAAGGGAAGAGACAACGATCA------GGTGGCGGTGGAGAAGA 519
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 GGTTGGATCAATCTGGAAAGGGAAGAGACAACGATCAGGTGGCGGTGGCGGTGGAGAAGA 533
Query 520 GGACGACGAAGAGGAAGATACTGAATCGAAGAAGGACAAGGAAGATTTATGTGAGGAATG 579
|||||| |||||||||| | |||| | ||||| | |||||||||||||||||||||||
Sbjct 534 GGACGAGGAAGAGGAAGTTGCTGAGCCTAAGAA-G--AAGGAAGATTTATGTGAGGAATG 590
Query 580 CGATTTCTGCAGGGTCgatgatgatgatgatgaAGAAGAAAAGGAGGAGACTGTGTTTGG 639
||||||||||||| |||||||||||||||| || |||||||||||| |||| ||| ||
Sbjct 591 CGATTTCTGCAGGATCGATGATGATGATGAAGACGAAGAAAAGGAGAAGACAGTG-TT-- 647
Query 640 TAGAGAAGAGTTCTCTGAGATGTTAAGCAAAGTTCCTGTTGAAGATGCTCAGATCTTTGC 699
| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 648 T------GAGTTCTCGGAGATGTTAAGCAAAATTCCTGTTGAAGATGCTCAGATGTTTGC 701
Query 700 CAAATTGTCGTTTTTGGGGAATTTGGCTTATTCAATCCCTAAAATCAAGCCTGAGAATCT 759
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CAAATTGTCGTTTCTGGGGAATTTGGCTTATTCAATCCCTAAAATCAAGCCTGAGAATCT 761
Query 760 GTTGAAATATCAGAAACTGAGATTCGTTACTTCCTCAATTGAGAAGAGAACGAGTCTTAA 819
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 762 GTTGAAATATCAGAAACTGAGATTCGTTACATCCTCAATTGAGAAGAGGATGAGTCTTAA 821
Query 820 GGTTGAAGAGAACAACAATGGCGAGGACGAGGAGGAGAAGAAGAAGCTTATTAACCCAGC 879
||||||||||||||||||||||||||| || ||||||||||||||||| || ||||| ||
Sbjct 822 GGTTGAAGAGAACAACAATGGCGAGGAAGATGAGGAGAAGAAGAAGCTAATCAACCCTGC 881
Query 880 TGTTGCTTACAGAATCGCTGCTTCTGCTGCTTCTCGTCTCTTTTCCCATTCTAAGTCTGT 939
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 882 TGTTGCTTACAGAATCGCTGCTTCTGCAGCCTCTCGTCTCTTTTCCCATTCTAAGTCTGT 941
Query 940 GCTTCCTTTTGGATCATCTAAACGTCAACACAACGAAGAAGCTTCTCTATTGGCAACTGC 999
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 942 GCTTCCTTTTGGATCATCTAAACGTCAAGACAACGAAGAAGCTTCTCTACTGGCTACTGC 1001
Query 1000 TGATTCAGTTACGGCAGTCGTGGCAGCCAAAGAGGAAGTTAAACAGGCGGTCGCCGATGA 1059
|||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1002 TGATTCGGTTACTGCAGTCGTGGCAGCCAAAGAGGAAGTTAAGCAGGCCGTCGCAGATGA 1061
Query 1060 TCTCAAATCAAACCGTTCACCGCCTTGTGAGTGGTTTGTCTGTGATGATGATAAAAGTGG 1119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1062 TCTCAAATCAAACCGTTCACCGCCTTGTGAGTGGTTTGTATGTGATGATGATAAAAGCGG 1121
Query 1120 CACCAGGTTCTTCTTTATTCAGGGATCAGATTCACTGGCCTCATGGCAAGCTAACCTTCT 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CACCAGGTTCTTCTTTATTCAGGGATCAGATTCACTGGCCTCATGGCAAGCTAACCTTCT 1181
Query 1180 GTTCGAGCCTGTTCCATTTGAGGACCTTGATGTGCTTGTTCACAGAGGCATCTACGAAGC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1182 GTTCGAGCCTGTTCCATTTGAGGACCTTGATGTGCTTGTTCACAGAGGCATATACGAAGC 1241
Query 1240 TGCAAAAGGACTATACGAACAGATGTTACCGGAAGTTCATGCCCACCTCAATTCCCGTGG 1299
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1242 TGCAAAAGGAATATACGAACAGATGTTACCAGAAGTTCATGCCCACCTCAATTCCCGTGG 1301
Query 1300 CAAGCACCGTGCTTTTCTCAGGTTTAGCGGACATTCTCTAGGCGGAAGCCTGTCACTGTT 1359
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1302 CAAGAACCGTGCTTTTCTCAGGTTTAGTGGACATTCTCTAGGCGGAAGCTTGTCATTGTT 1361
Query 1360 AGTGAACCTCATGCTTCTGATCCGAGGTCAAGTCCCGGCTTCTTCTCTGCTCCCGGTGAT 1419
||||||||||||||||||||| ||||||||||||| |||||||||||||| || |||||
Sbjct 1362 AGTGAACCTCATGCTTCTGATAAGAGGTCAAGTCCCTGCTTCTTCTCTGCTTCCAGTGAT 1421
Query 1420 CACTTTTGGTTCACCATGCATCATGTGCGGAGGTGATAGGCTTCTTCAGAAACTTGGTTT 1479
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1422 CACTTTTGGTTCGCCTTGCATCATGTGCGGAGGCGATAGGCTTCTTCAGAAACTTGGTTT 1481
Query 1480 GCCTAAGAGTCATCTTCTCGGAATCTCAATGCATAGAGATATTGTTCCCCGAGCATTCTC 1539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1482 GCCTAAGAGTCATCTTCTCGGAATCTCAATGCATAGAGATATTGTTCCTCGAGCATTCTC 1541
Query 1540 TTGCAATTATCCTAACCGAGCCGCAAAGCTTCTCAAGGCATTGAATGGAAACTTCAGGAA 1599
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1542 CTGCAATTACCCTAACCGAGCCGCAAAGCTTCTCAAGGCATTGAATGGAAACTTCCGGAA 1601
Query 1600 CCATCCTTGTCTGAATAACCAGAATGTATTGTATTCTCCAATGGGGAAGCTTCTAATTCT 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CCATCCTTGTCTGAATAACCAGAATGTATTGTATTCTCCAATGGGGAAGCTTCTAATTCT 1661
Query 1660 GCAACCATCCGAGAGATTCTCTCCCCCACATCCTCTGCTTCCTCCCGGAAGTGGTATCTA 1719
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1662 GCAACCATCCGAGAGATTCTCTCCCCCACACCCCCTGCTTCCTCCCGGAAGTGGTCTCTA 1721
Query 1720 TCTCTTAACATCTAAGAATACGGATGAAACAGAGAAAAGTTTAAGGGCTGCAAAGAGTGT 1779
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| | |
Sbjct 1722 TCTCTTAGCATCTAAGAATACCGATGAAACAGAGAAAAGTCTAAGGGCTGCAAAGATTCT 1781
Query 1780 CTTCTTTAACTCACCACACCCCCTAGAGATTCTCAGTGATCGTCGTTCTTACGGGTCAGA 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1782 CTTCTTTAACTCACCACACCCCCTAGAGATTCTCAGTGATCGTCGTTCTTACGGGTCGGA 1841
Query 1840 AGGAAAAATCAAAAGAAACCATGACATGAGCTCTTACCTGAAGGCCTTGAGGCATGTGGT 1899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1842 AGGAAAAATCAAAAGAAACCATGACATGAGCTCTTACCTGAAGGCCTTGAGGCATGTGAT 1901
Query 1900 TCGGAAGGAGCTGAAGCAGAT-AAAGGCTGAGCGGGATCAGTGGCGGCGCAAGTTCTTTA 1958
|||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||
Sbjct 1902 CCGGAAGGAGCTGAAGCAGATGAAAG-CTGAGCGGGATCAATGGCTGCGCAAGTTCTTTA 1960
Query 1959 TTATAAACATTTTATTTACTGGGAGAGATTCTTTGAAACTCATAACAAGATTTGTGGCAT 2018
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1961 TTATAAACATTTTATTTAGTGGGAGAGATTCTTTGAAACTCATAACAAGATTCGTGGCAT 2020
Query 2019 CAAGGAGTAGTCAACTAGTGATCATCTTCTTTCTCCCAATTAGATTGTTAATTATGAGTG 2078
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2021 CAAGGAGTAGTCAACTAGTGATCATCTTCTTTCTCCCAATTAGATTGTTAATAATGAGTG 2080
Query 2079 TCTATGGTGTGGTCTTTCACCACTCACAAGCACATTTTAGTTTCTTCAAGTGAAGC---T 2135
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 2081 TCTACAGTGTGGTCTTTCACCATTCACAAGCACATTTTAGTTTCTTCAAGTGAAGCAGCT 2140
Query 2136 TAGGCCTACTCTGTAATAGAATCTATCACACA 2167
|||||||| ||||||||||||||||||| |||
Sbjct 2141 TAGGCCTATTCTGTAATAGAATCTATCAAACA 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107479366845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5