BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486764
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62660.1 | Symbols: GATL7 | galacturonosyltransferase-like 7... 2730 0.0
> AT3G62660.1 | Symbols: GATL7 | galacturonosyltransferase-like
7 | chr3:23172806-23174762 FORWARD LENGTH=1957
Length=1957
Score = 2730 bits (1478), Expect = 0.0
Identities = 1838/1993 (92%), Gaps = 99/1993 (5%)
Strand=Plus/Plus
Query 1 GACAAAATGAATAGAGATAATATATAAACACAAGCATTAGGCTCTGTCGAGAAAACATAA 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GACAAAATGAATAGAGATAATATATAAACACAAGCATTAGG--CTGTCGAGAAAACATAA 58
Query 61 ATTTTCTATGATTAGGCCATACAAAT-A-AATCTGTT-T-G---T---------TG-GCT 103
|||||||||||||||||||||||||| | ||| || | | | | | |
Sbjct 59 ATTTTCTATGATTAGGCCATACAAATCATAATAAGTAGTAGAAATACAAAAAAATCTGTT 118
Query 104 T-T-GG--A--GA-AA-TCCAAGGAATTAGTCCTTTT-ACCCATTTttctctctctctct 154
| | || | || || || |||||||||||| |||| |||||||||||||||||| | |
Sbjct 119 TGTTGGCTAAAGAGAAATCGAAGGAATTAGTC-TTTTCACCCATTTTTCTCTCTCTGTGT 177
Query 155 ggcttcttcttcttcttcttc--C-TATCAAA-TCA-C--CATC-T-T-CTCTATATTAC 204
||||||||||||||||||||| | ||||||| ||| | |||| | | |||||||||||
Sbjct 178 GGCTTCTTCTTCTTCTTCTTCTTCCTATCAAAATCATCATCATCATCTTCTCTATATTAC 237
Query 205 TAAAATAGAGAGCCAAAGACATA-AAAAGAGAGGAGAGGGCGTAAAACAGCAGACGGTGG 263
|||||||||||| | | || | ||||||||||||||||||||||||||||||||||||
Sbjct 238 TAAAATAGAGAG--A--GCCA-ACAAAAGAGAGGAGAGGGCGTAAAACAGCAGACGGTGG 292
Query 264 CGCACCGTAGCACCGCCCCCTCCTAACCTGCGCCTCTCTTC-TTCTCTTTCAtttttttt 322
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 293 CGCACCGTAGCACCGCCCCCTCCTAACCTGCGCCTTTCTTCCTTCTCTTTCATTTTTTTT 352
Query 323 tt--CCGGTTTCAGGAATTATTCCTCTCCTCCTCTCTCAGGTCGCTTCGATCCCAAGGCA 380
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTTTCCGGTTTCAGGAATTATTCCTCTCCTCCTCTCTCAGGTCGCTTCGATCCCAAGGCA 412
Query 381 AA-TAGttttctgattttccgattcttaccttcaattttg-cattttttcttcttcttct 438
|| |||||| |||||||| ||||||||||||| |||||| | || |||||||||||
Sbjct 413 AAATAGTTTCCTGATTTTT-GATTCTTACCTTCGATTTTGGC-TT----CTTCTTCTTCT 466
Query 439 tcttcAGATGCATTCACCTACAAAACTCTGGCGGACATCAAAGGAACCCTAGCTTTTCTC 498
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 467 TCTTCAGATGCATTCACCTAGAAAACTCTGGCGGACATCAAAGGAACCCTAGCTTTTCTC 526
Query 499 CGGTCTT---ATATCGCCTCTATCGCCGCCGATCGGTGGTTTGATTTCAAATCCAAGAAG 555
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 527 CGGTCTTGTTATATCGCCTCTATCGCCGCCGATCGGTGGTTTGATTTCAAATCCAAGA-G 585
Query 556 AA-GAAACGCAGAGGTTCGATTCGTAGTCGTCTCAGGATGCTTTGGATCATGAGATTCTC 614
|| ||||||||||||||| ||| | | || ||||||||||||||||||||||||||
Sbjct 586 AAAGAAACGCAGAGGTTC-ATT--T---C-TC--AGGATGCTTTGGATCATGAGATTCTC 636
Query 615 CGGTTTATTCTCCGCCGCTTTGGTTATCATCGTCCTCTCTCCTTCTCTCCAATCGTTTCC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CGGTTTATTCTCCGCCGCTTTGGTTATCATCGTCCTCTCTCCTTCTCTCCAATCGTTTCC 696
Query 675 TCCAGCTGAAGCTATCAGATCCTCTCATCTCGACGCTTACCTCCGATTTCCC-TCCTCCG 733
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 697 TCCAGCTGAAGCTATCAGATCCTCTCATCTCGACGCTTACCTCCG-TTTCCCCTCCTCCG 755
Query 734 ATCCACCGCCGCATAGATTCTCCTTCAGAAAAGCTCCTGTTTTCCGCAATGCCGCCGATT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATCCACCGCCGCATAGATTCTCCTTCAGAAAAGCTCCTGTTTTCCGCAATGCCGCCGATT 815
Query 794 GCGCCGCCGCAGATGTCGATTCCGGCGTCTGTAACCCTTCCTTGGTCCACGTCGCGATTA 853
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GCGCCGCCGCAGATATCGATTCCGGCGTCTGTAACCCTTCCTTGGTCCACGTCGCGATTA 875
Query 854 CTCTGGATTTCGAGTACCTACGTGGCTCAATCGCCGCCGTTCATTCGATTCTCAAGCATT 913
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 876 CTCTCGATTTCGAGTACCTGCGTGGCTCAATCGCCGCCGTTCATTCGATTCTCAAGCACT 935
Query 914 CGTCGTGTCCCGAGAGCGTCTTCTTCCATTTCCTCGTCTCCGAGACTGACCTAGAATCCT 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CGTCGTGTCCCGAGAGCGTCTTCTTCCATTTCCTCGTCTCCGAGACTGACCTAGAATCCT 995
Query 974 TGATTCGTTCGACTTTTCCCGAATTGAAATTAAAGGTTTACTTCTTCGATCCGGAGATTG 1033
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 996 TGATTCGTTCGACTTTTCCCGAATTGAAATTAAAGGTTTACTACTTCGATCCGGAGATTG 1055
Query 1034 TACGGACTCTGATCTCAACCTCCGTCAGACAAGCGCTTGAGCAGCCGTTGAATTACGCTC 1093
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1056 TACGGACGCTGATCTCAACCTCCGTGAGACAAGCGCTCGAGCAGCCGTTGAATTACGCTA 1115
Query 1094 GAAATTACCTTGCTGATCTTCTTGAGCCTTGCGTGCGTCGCGTCATTTACCTAGATTCCG 1153
|||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1116 GAAATTACCTAGCTGACCTTCTCGAGCCTTGCGTGCGTCGCGTGATCTACCTAGATTCCG 1175
Query 1154 ATCTAGTCGTCGTCGACGATATCGCGAAGCTGTGGAAGACGAA-CTTGGGATCGAAAACG 1212
||||| ||||||||||||| ||||| ||||| |||| |||||| || |||||||||||||
Sbjct 1176 ATCTAATCGTCGTCGACGACATCGCAAAGCTCTGGATGACGAAACT-GGGATCGAAAACG 1234
Query 1213 ATCGGAGCTCCTGAATACTGTCACGCGAACTTCACGAAGTATTTCACACCGGCGTTCTGG 1272
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1235 ATCGGAGCTCCCGAGTACTGTCACGCGAACTTCACAAAGTATTTCACACCGGCGTTCTGG 1294
Query 1273 TCCGACGAGAGGTTCTCCGGAGCTTTCACCGGGAGAAAACCGTGCTACTTCAACACGGGA 1332
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1295 TCCGACGAGAGGTTCTCCGGAGCTTTCTCCGGGAGGAAACCGTGCTACTTCAACACGGGA 1354
Query 1333 GTGATGGTGATGGATCTAGAGAGATGGAGGCGCGTAGGGTACACGGAGGTGATAGAGAAA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GTGATGGTGATGGATCTAGAGAGATGGAGGCGCGTAGGGTACACGGAGGTGATAGAGAAA 1414
Query 1393 TGGATGGAGATTCAGAAGAGTGATAGGATCTACGAGCTGGGATCATTGCCACCGTTCTTG 1452
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1415 TGGATGGAGATTCAGAAGAGTGATAGGATTTACGAGCTGGGATCATTGCCGCCGTTCTTG 1474
Query 1453 CTGGTATTCGCCGGAGAAGTAGCTCCGATAGAGCATCGGTGGAACCAGCATGGACTTGGT 1512
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1475 TTGGTGTTCGCCGGAGAAGTAGCTCCGATAGAGCATCGGTGGAACCAGCATGGGCTTGGT 1534
Query 1513 GGAGATAACGTGAGAGGAAGCTGTAGAGATCTACATCCCGGTCCGGTTAGCTTGCTTCAT 1572
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1535 GGAGATAACGTGAGAGGAAGCTGTAGAGATTTACATCCCGGTCCGGTTAGCTTGCTTCAT 1594
Query 1573 TGGTCCGGTAGTGGTAAACCGTGGTTCCGGTTAGATTCGAGACGGCCTTGTCCACTTGAT 1632
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1595 TGGTCCGGTAGTGGTAAACCGTGGTTTCGGTTAGATTCGAGACGGCCTTGTCCACTTGAT 1654
Query 1633 ACTCTTTGGGCACCTTATGATTTGTATGGACACTAGTCTCGCtgatgatgatgatgatga 1692
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1655 ACTCTTTGGGCACCTTATGATTTGTATGGACACTACTCTCGCTGATGATGAT--TGATGA 1712
Query 1693 tgatCTCTGTTATTACATATTAT-A--GTCTCAG-CT--G--G-TAAATTCTCTCATCGC 1743
| ||||||||||||||||||| | ||||||| || | | |||||||||||||| |
Sbjct 1713 T---CTCTGTTATTACATATTATTATAGTCTCAGTCTCAGCTGGTAAATTCTCTCATCTC 1769
Query 1744 CTTTGACaaaaaacaaaaaCCATTAATTCTTTCTTTCTTCTTTTGATTT-ACCAACTTTT 1802
||||||||||||| |||||| ||| ||||| || || |||||||||| ||||||||||
Sbjct 1770 CTTTGACAAAAAA-AAAAAC-ATTCTTTCTT-CT--CT-CTTTTGATTTTACCAACTTTT 1823
Query 1803 TGTTGGAATTTGTTTCGTTCCTCTGTACTCTATTCGATTGTTCTGTGCATAAAACCATAG 1862
|||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 1824 GGTTGGAATTTGTTTCGTTACTCTGTATTCTATTCGATTGTTCTGTGCATCAAACCATAG 1883
Query 1863 GATACATTCAGATTTGTTGT---ACAGACTTTTT-ACCATATGtttttttAATATAATTC 1918
|||||| ||||||||||||| ||| ||||||| ||||||||||| |||||||||||||
Sbjct 1884 GATACAATCAGATTTGTTGTTGTACAAACTTTTTTACCATATGTTTCTTTAATATAATTC 1943
Query 1919 TGTCATCTTTTTT 1931
|||||||||||||
Sbjct 1944 TGTCATCTTTTTT 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95632038225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5