BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486765 Length=1296 Score E Sequences producing significant alignments: (Bits) Value AT3G62670.1 | Symbols: ARR20, MEE41, RR20 | response regulator ... 1339 0.0 > AT3G62670.1 | Symbols: ARR20, MEE41, RR20 | response regulator 20 | chr3:23176556-23178631 REVERSE LENGTH=1287 Length=1287 Score = 1339 bits (725), Expect = 0.0 Identities = 1004/1127 (89%), Gaps = 65/1127 (6%) Strand=Plus/Plus Query 198 AGTAACGAAATACGAAGA-CGGAGAAGAGGCCATGGCTTTCTTGATGAAGAATAAGCAAG 256 |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 198 AGTAACGAAATATG-AGAGCGGAGAAGAGGCCATGGCTTTCTTGATGAAGAATAAGCATG 256 Query 257 AAATCGATCTAGTGATTTGGGATTTCCATATGCCCGATATCAATGGACTCGACGCTCTCA 316 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 AGATCGATCTAGTGATTTGGGATTTCCATATGCCCGATATCAATGGACTCGACGCTCTCA 316 Query 317 ATACCATTGGTAAAGAGATGGATTTACCCTTAGTAATCATGTCTCATG-ATCACAAAAAG 375 ||| |||||||||| |||||||||||||| |||||||||||||||||| || |||| ||| Sbjct 317 ATATCATTGGTAAACAGATGGATTTACCCGTAGTAATCATGTCTCATGAAT-ACAAGAAG 375 Query 376 GAAACGGTGATGGAATCGATTAAGTACGGCGCGTGTGACTTTCTTGTGAAGCCGGTGAGC 435 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 376 GAAACGGTGATGGAATCGATTAAGTACGGTGCGTGTGACTTTCTTGTGAAGCCGGTGAGC 435 Query 436 AAAGAGGTCATTGCAGTTCTATGGCGACATGTTTATCGCAAAAGGATGTCAAAATCTGGT 495 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 436 AAAGAGGTCATTGCAGTTCTATGGCGACATGTTTATCGAAAAAGGATGTCAAAATCTGGT 495 Query 496 TTAGATAAACCGGGTGAATCAGGTACGGTTGAATCAGATCCGGACGAATACGACGATTTA 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 TTAGATAAACCGGGTGAATCAGGTACGGTTGAATCAGATCCGGACGAATACGACGATTTA 555 Query 556 GGGCAAGACAATCTCTATCAGAGCAACGAAGAAGGCTCCAAAAACTCTTCCGATCAAAAA 615 | |||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||| Sbjct 556 GAGCAAGACAATCTCTATGAGAGCAACGAAGAAGGCTCCAAAAACACTTGCGATCACAAA 615 Query 616 GGAGAGAAGCCTGCGACCAAGAAACCGCGGATGCAATGGACTACTGAACTTCACCACAAA 675 | ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 616 GAAGAGAAGTCTCCGACCAAGAAACCGCGGATGCAATGGACTCCTGAACTTCACCACAAA 675 Query 676 TTTGAAGTAGCCGTCGAAAAACTCGGCAGCCTTGAGAAGGCTTTTCCGAAGACGATTCTC 735 ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| Sbjct 676 TTTGAAGTAGCCGTCGAAAAAATGGGCAGCCTTGAGAAGGCTTTTCCAAAGACGATTCTC 735 Query 736 AAATATATGCAAGAAGAAATGAATGTCCAGGGGCTCACTAGAAACAACGTAGCCAGTCAT 795 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 736 AAATATATGCAAGAAGAATTGAATGTCCAGGGGCTCACTAGAAACAACGTAGCCAGTCAT 795 Query 796 CTTCAGAAGTACCGTCAAAATTCAAAACAAAAGACCCGCACTCAC-CAGGAGCCCCAAGA 854 || |||||||||||||||| ||| ||| || |||| |||||| | |||||||| ||||| Sbjct 796 CTCCAGAAGTACCGTCAAAGTTCCAAA-AA--GACCTGCACTC-CTCAGGAGCCTCAAGA 851 Query 855 AGATTTTTTCTGGCGTAATGCTGGGCCAGATGCCACTCTCGCAGCCTCTAATCCGCCCCT 914 ||||||| ||||| |||||||||||||||||| |||||| ||||||||||| ||| ||| Sbjct 852 AGATTTTGTCTGGGGTAATGCTGGGCCAGATGTCACTCTTGCAGCCTCTAAAACGCTCCT 911 Query 915 AAGCTCGAACCTCAATATCCATGCTACCGCATCGTATTTGATGAACAATCAAGCTGCGCC 974 |||||| || | | | | | ||| |||||||||||| ||||||||||||||||| Sbjct 912 AAGCTC---CC--A-TG-CTA--C-ACC--ATCGTATTTGATAAACAATCAAGCTGCGCC 959 Query 975 TAGAGCATCATATTTCATGAACAATCAAGCCGCATCCCCAATCCCGTATCCATCAAACAG 1034 ||||| ||||||||||||||||||| | |||| ||||||||||| ||| Sbjct 960 TAGAGGATCATATTTCATGAACAAT-A-------TCCC-------GTATCCATCAACCAG 1004 Query 1035 TTGCCTGCCAATGAACAACAACAACTACTTCATGACCAAACCTTTCACTTATATTGACCA 1094 |||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||| Sbjct 1005 TTGCCTGCCAGTGAACAACAACAACTGCTTCATGACCAACCCTTCCACTTATATTGACCA 1064 Query 1095 ATTCCAGCA---GC---AGCA--A-CA--A-CA------GTACCATTCGT-CTCTAAAT- 1134 ||||||||| || |||| | || | || |||||| || | |||||||| Sbjct 1065 ATTCCAGCACCAGCTGCAGCAGCAGCAGCAACATCAACAGTACCAGTC-TACTCTAAATA 1123 Query 1135 -T-TACCCT-CCATGCTAACCAAGCAAGAACCTAGACACGTGCCATTATCAGCCATGGAA 1191 | || | | |||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1124 GTATATC-TGCCATGCTAACCAAGCAAGAATCTAGACACGTGCCATCATCAGCCATGGAA 1182 Query 1192 AATTTCGATACGCCCATGATCTATAATTCAAGTTT-CCATTTCGATCA-CGACGAGTATT 1249 |||| ||| ||| ||||||||||||||||| | | || ||||| | | |||||||| || Sbjct 1183 AATTCCGAGCCGCTCATGATCTATAATTCAAATCTACC-TTTCGGT-ATCGACGAGTGTT 1240 Query 1250 TCCCACCTGAAGGATTCAACAATTTCGATCAGATTGGTCAGAATTGA 1296 ||||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 1241 TCCCACCTGCAGGATTCAACATTTTCGATCAGATTGGTCACAATTGA 1287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63754692150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5