BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486769
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62710.1 | Symbols: | Glycosyl hydrolase family protein | c... 3127 0.0
> AT3G62710.1 | Symbols: | Glycosyl hydrolase family protein |
chr3:23197658-23200635 REVERSE LENGTH=2110
Length=2110
Score = 3127 bits (1693), Expect = 0.0
Identities = 1968/2099 (94%), Gaps = 26/2099 (1%)
Strand=Plus/Plus
Query 1 AGGATTTAGAAAGATCACTATATCTTTTAAATCAATATTCTGAATTCTCCCTGGTTAAGG 60
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AGGATTTAGAAAGATCATTATATCTTTTTAATCAATATTCTGAATTCTCCCTGGTTAAGG 60
Query 61 AGGAGGGTCTCCATCAATGGCGGCGGCAATGTACGGCGTCAGGAGCTTTTTCTTCTCGGC 120
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGGAGGGTCTCCGTTAATGGCGGCGGCAATGTTCGGCGTCAGGAGCTTTTTCTTCTCGGC 120
Query 121 GGTGATTGTGATATTGTTCGCCAGCCGTTTTGGAGACGCCACCGCAGCTGACAGAGGATA 180
||||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct 121 GGTGATTGTGATACTGTTCGCCGGCCGTTATGGAGAAGCCACCGCAGCTGACAGAGGATA 180
Query 181 CATTAAGTACAAAGATCCAAAAGTAGCGGTGGAAGAAAGAGTAGAAGACTTGTTGATACG 240
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 181 CATTAAGTACAAAGATCCTAAAGTAGCGGTCGAAGAAAGAGTAGAAGACTTGCTGATACG 240
Query 241 GATGACGTTACCGGAGAAACTTGGTCAAATGTGTCAAATTGATCGGTTCAACTT-T-TCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 TATGACGTTACCGGAGAAACTTGGTCAAATGTGTCAAATTGATCGGTTCAACTTCTCACA 300
Query 299 A--TAAC--T--CGT---C-C------GACAGATATCTTCACAAAGTATATGATCGGAAG 342
| || | | || | | | |||| |||||||||||||| |||||||||||
Sbjct 301 AGTTACCGGTGGTGTGGCCACTGTTGTGCCAGAAATCTTCACAAAGTACATGATCGGAAG 360
Query 343 TGTTTTGAGCAATCCGTTTGATACCGGGAAAAATATATCAGAGCGGATATTGGATATTAA 402
||||||||||||||||| ||||||||||||| | ||| || |||||||||| | | |||
Sbjct 361 TGTTTTGAGCAATCCGTATGATACCGGGAAAGACATAGCAAAGCGGATATTCCAGACTAA 420
Query 403 CGTGATGAAGAAATTGAGTCTTTCGACGAGGCTCGGAATTCCTCTGCTTTACGCTCTTGA 462
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 421 CGCGATGAAGAAATTGAGTCTTTCGACGAGGCTCGGAATCCCTCTGCTTTACGCTGTTGA 480
Query 463 CGCGGTTCATGGCCACAGTACTTTTATTGATGCAACCATTTTCCCCCACAACGTCGGACT 522
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 CGCGGTTCATGGCCACAATACTTTTATTGATGCAACCATTTTCCCCCACAATGTCGGACT 540
Query 523 TGGTGCCACTAGGGATCCTCAACTTGTTAAAAAGATTGGAGCTATAACCGCGCAGGAAGT 582
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TGGTGCCACTAGGGATCCTCAACTTGTTAAAAAGATTGGGGCTATAACCGCGCAGGAAGT 600
Query 583 AAGGGCAACAGGAGTCGCTCAAGTTTTTGCACCTTGTGTTGCGGTTTGCAGAGATCCTAG 642
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGGCAACAGGAGTCGCTCAAGCTTTTGCACCTTGTGTTGCGGTTTGCAGAGATCCTAG 660
Query 643 ATGGGGAAGGTGTTACGAGAGCTATAGTGAAGACCCTGCAGTTGTGAATATGATGACCGA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGGGAAGGTGTTACGAGAGCTATAGTGAAGACCCTGCAGTTGTGAATATGATGACCGA 720
Query 703 AAGTATCATCGATGGATTACAAGGAAATGCTCCTTACCTCGCCGATCCCAAGATTAATGT 762
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 AAGTATCATCGATGGATTACAAGGAAATGCTCCTTACCTCGCTGATCCCAAGATTAATGT 780
Query 763 GGCTGGTTGCGCCAAACATTTTGTTGGGGACGGAGGGACAATAAATGGAATCAATGAGAA 822
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 GGCTGGTTGCGCCAAACATTTTGTTGGGGACGGAGGCACAATAAATGGAATCAATGAGAA 840
Query 823 CAACACTGTGGCTGATAACGCTACTCTTTTTGGTATCCATATGCCTCCGTTTGAGATAGC 882
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 CAACACTGTGGCTGATAACGCTACTCTCTTTGGTATCCATATGCCTCCGTTTGAGATAGC 900
Query 883 AGTGAAGAAAGGGATCGCATCAATCATGGCTTCTTACTCTAGTCTTAACGGTGTTAAAAT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 AGTGAAGAAAGGGATCGCATCAATCATGGCTTCTTACTCTAGTCTTAACGGTGTTAAGAT 960
Query 943 GCATGCAAACCGTGCAATGATCACTGATTACCTCAAGAACACTCTCAAATTCCAAGGCTT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCATGCAAACCGTGCAATGATCACTGATTACCTCAAGAACACTCTCAAATTCCAAGGCTT 1020
Query 1003 TGTTATCTCTGATTGGTTTGGAATTGATAGGATCACACCGATACCAAAATCAAACTACAC 1062
|||||||||||| ||| | |||||||||| ||||||||||||| |||||||||||||||
Sbjct 1021 TGTTATCTCTGACTGGCTCGGAATTGATAAGATCACACCGATAGAAAAATCAAACTACAC 1080
Query 1063 TTACTCCATTGAAGCTTCTATTAATGCCGGCATTGACATGGTTATGGTTCCATGGGAGTA 1122
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 TTACTCCATCGAAGCTTCTATTAATGCCGGCATTGACATGGTTATGGTTCCATGGGCGTA 1140
Query 1123 TAAAGAGTACTTGGCGGAATTGACAAAACTAGTGAACGGAGGATACATCCCTATGAGCCG 1182
| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 TCCAGAGTACTTGGAGAAATTGACAAATCTAGTGAACGGAGGATACATCCCTATGAGCCG 1200
Query 1183 CATCGACGATGCTGTTCGAAGGATCTTGAGAGTCAAATTCTCTATCGGTCTCTTTGAGAA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CATCGACGATGCTGTTCGAAGGATCTTGAGAGTCAAATTCTCTATCGGTCTCTTTGAGAA 1260
Query 1243 CTCATTGGCAGATGAAAAACTTGCCACTCCTGAGTTTGGATCTGAGGCTCATCGAGAAGT 1302
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1261 CTCATTGGCAGATGAAAAACTTCCCACTACTGAGTTTGGATCTGAGGCTCATCGAGAAGT 1320
Query 1303 AGGGAGAGAGGCGGTGAGGAAATCAATGGTGCTTCTAAAGAACGGGAAGACAGACGCGGA 1362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1321 AGGGAGAGAGGCGGTGAGGAAATCAATGGTGCTTCTAAAGAACGGAAAGACAGACGCCGA 1380
Query 1363 TAAAATTGTGCCGCTCCCGAAGAAGGTGAAAAAGATCGTTGTCGCGGGGCGACACGCTAA 1422
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1381 TAAAATTGTGCCGCTCCCGAAGAAGGTGAAAAAGATCGTTGTCGCGGGACGACACGCTAA 1440
Query 1423 CAACATGGGATGGCAATGCGGTGGCTTTACTCTCACGTGGCAAGGATTCAACGGAACCGG 1482
| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct 1441 CGACATGGGATGGCAATGCGGTGGCTTTAGTCTCACTTGGCAAGGATTTAACGGAACCGG 1500
Query 1483 AGAAGATATCCCCGCTAACAA-AAA-ATTCGGATTCCCTACCGGTAAAACAAGAGGAACA 1540
|||||||| ||| |||||| ||| || ||| ||||||||||||||| || ||||||
Sbjct 1501 TGAAGATATGCCCACTAACACGAAACAT--GGACTCCCTACCGGTAAAATAAAAGGAACC 1558
Query 1541 ACAATATTGGAAGCCATCCAGAAAGCAGTAGATCCCACTACTGAGGTTGTCTACGTGGAA 1600
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ACCATATTGGAAGCCATCCAGAAAGCAGTAGATCCCACTACTGAGGTTGTCTACGTGGAG 1618
Query 1601 GAACCAAACCAAGATACAGCGAAGCTTCACGCCGACGCAGCATACACAATTGTGGTCGTC 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GAACCAAACCAAGATACAGCGAAGCTTCACGCCGACGCAGCATACACAATTGTGGTCGTC 1678
Query 1661 GGAGAAACCCCGTACGCAGAGACACGTGGGGACAGTCCTACTCTAGGTATCGCCGACCCA 1720
||||||||||| |||||||||||| ||||||||| || || || ||||| || | |||
Sbjct 1679 GGAGAAACCCCTTACGCAGAGACATTTGGGGACAGCCCCACGCTGGGTATAACCAAGCCA 1738
Query 1721 GGTCCAGATACGCTCAGATTGACGTGCGGTAATGGGATGAAGTGTCTAGTGATCCTAGTC 1780
|||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 1739 GGTCCAGACACGCTCAGCCACACGTGTGGTAGTGGGATGAAGTGTCTAGTGATCCTAGTC 1798
Query 1781 ACTGGACGTCCGCTCGTGATGGAGCCTTACCTTGATATGATCGATGCTCTTGCAGTCGCA 1840
|||||||||||||||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 1799 ACTGGACGTCCGCTCGTGATCGAACCTTACATTGATATGCTCGATGCTCTTGCAGTCGCA 1858
Query 1841 TGGCTTCCTGGAACCGAAGGACAAGGAGTCGCTGATGTCTTGTTTGGTGATCATCCCTTC 1900
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1859 TGGCTTCCCGGAACCGAAGGACAAGGAGTTGCTGATGTCTTGTTTGGTGATCATCCCTTC 1918
Query 1901 ACCGGCACGTTGCCTCGCACGTGGATGAAGCATGTTGTTCAGCTTCCAATGAACGTTGGC 1960
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1919 ACCGGCACGTTGCCTCGCACGTGGATGAAGCATGTTACCCAGCTTCCGATGAACGTTGGC 1978
Query 1961 GACGAGTACTACGACCCTCTCTACCCCTTCGGATACGGAATCAAAACCTAAATCAATAAC 2020
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 GACAAGAACTACGACCCTCTCTACCCCTTCGGATACGGAATCAAAACCTAAATCAATAAC 2038
Query 2021 G-A---TAACCATGTAATTATGTGAACAATATAACTGTAACACTTTCCCAATCAATATT 2075
| | |||||||||| |||| |||||||| |||||||||||||||||| |||||||||
Sbjct 2039 GTACGATAACCATGTATTTATATGAACAATGTAACTGTAACACTTTCCCGATCAATATT 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102860916705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5