BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486776
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62760.1 | Symbols: ATGSTF13 | Glutathione S-transferase fam... 1031 0.0
> AT3G62760.1 | Symbols: ATGSTF13 | Glutathione S-transferase family
protein | chr3:23217425-23218246 REVERSE LENGTH=660
Length=660
Score = 1031 bits (558), Expect = 0.0
Identities = 622/654 (95%), Gaps = 0/654 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGTATATGGAGATGAGATGTCAGCGTCCGTGGCACGTGTTCTTCTCTGCCTCCAT 60
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 7 ATGAAGCTATATGGAGATGAGATGTCAGCGTGCGTGGCACGTGTTCTTCTCTGCCTTCAT 66
Query 61 GAGAAGAACACCGAGTTCGAGCTTGTCCCTGTCAATCTCTTTGCTTGCCACCACAAGCTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GAGAAGAACACTGAGTTCGAGCTTGTCCCTGTCAATCTCTTTGCTTGCCACCACAAGCTC 126
Query 121 CCTTCTTTTCTCTCCATGAACCCCTTTGGCCAAGTTCCAGCTCTACAAGACGATGATCTT 180
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 127 CCTTCTTTTCTCTCCATGAACCCCTTTGGCAAAGTTCCAGCTCTACAAGATGACGATCTT 186
Query 181 ACTCTTTTTGAGTCGAGGGCAATCACTGCATATATAGCAGAGAAACATAGAGACAAAGGA 240
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 ACCCTTTTTGAGTCGAGGGCAATCACTGCATATATAGCAGAGAAGCATAGAGACAAAGGA 246
Query 241 ACGGATGTGACAAGACACGAAAACTCTAAAGAAGCAGCGATTGTGAAGTTATGGTCGGAA 300
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 247 ACGGATTTGACAAGACACGAAGACCCTAAAGAAGCAGCGATTGTGAAGTTATGGTCGGAA 306
Query 301 GTGGAGGCTCACCACTTCAACCCGGCGATATTCGCCGTCATCCACCAGCTCATTGTGGTG 360
||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || |||
Sbjct 307 GTGGAGGCTCACCACTTCAACCCTGCGATCTCCGCCGTCATCCACCAGCTCATCGTCGTG 366
Query 361 CCGCTTCAAGGCGAATCTCCTGATGCAGCCATCGTAGAGAAGAATCTGGAGAAGCTAGAG 420
||||||||||| || |||||| ||||||||||||| ||| ||||||||||||| |||| |
Sbjct 367 CCGCTTCAAGGTGAGTCTCCTAATGCAGCCATCGTGGAGGAGAATCTGGAGAATCTAGGG 426
Query 421 AAAGTGCTCGACGTGTACGAAGAGAGACTTGGGAAGACAAAATACTTAGCCGGAGATACT 480
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AAAATACTTGACGTGTACGAAGAGAGACTTGGGAAGACAAAATACTTAGCCGGAGATACT 486
Query 481 TACACACTCGCAGATCTCCACCACGTTCCGTACACTTACTACTTCATGAAGACGAGTCAT 540
||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 487 TACACACTCGCCGATCTCCACCACGTGCCTTACACTTACTACTTCATGAAGACGATTCAT 546
Query 541 GCCGGTTTGATCAACGACCGTCCTAATGTCAAGGCGTGGTGGGAAGATCTCTGTTCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCCGGTTTGATCAACGACCGTCCTAATGTCAAGGCGTGGTGGGAAGATCTCTGTTCTCGT 606
Query 601 CCGGCTTTCCTTAAAGTCTCTCCTGGCTTGACCGTTGCTCCCACCACAAATTGA 654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 607 CCGGCTTTCCTTAAAGTCTCTCCAGGCTTGACCGTTGCTCCCACCACAAATTGA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5