BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486779
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62770.1 | Symbols: AtATG18a | Transducin/WD40 repeat-like s... 2263 0.0
> AT3G62770.1 | Symbols: AtATG18a | Transducin/WD40 repeat-like
superfamily protein | chr3:23218633-23221232 REVERSE LENGTH=1625
Length=1625
Score = 2263 bits (1225), Expect = 0.0
Identities = 1417/1503 (94%), Gaps = 40/1503 (3%)
Strand=Plus/Plus
Query 1 GGCAACAAGCAAAGCACGAAGTCAtcttcttcttcctatttc-tctattcctccttctcc 59
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 10 GGCAACAAGCAAAGCACGAAGTCA---TCTTCTTCCTATTTCTTCTATTCCTCCTTCTCC 66
Query 60 acgcttcttcttcttcttcctcaatctctcttacgattccttcgaattccttcttccATG 119
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 67 ACGCTTCTTCTTCTTCTTCCTCAATCTCTCTTACGATTCCTTC-AAATCATTCTTCCATG 125
Query 120 GCCACCGTCTCTTCTTCCTCCTGGCCAAACCCCAACCCTAATCCCGATCCCACGTCTGCC 179
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 126 GCCACCGTATCTTCTTCCTCCTGGCCAAACCCCAACCCTAATCCCGATTCCACGTCTGCC 185
Query 180 TCAGATTCCGATTCTACTTTTCCCTCTCACCGCGTTCGCGGAGACGAAACCGACTCTCTC 239
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 186 TCAGATTCCGATTCTACTTTTCCCTCTCACCGCGATCGCGTAGACGAACCCGACTCTCTC 245
Query 240 GATTCCTTCTCCTCCATGAGTCTCAACTCCGACGAGCCTAATCAGAAC-TCTAATCAATC 298
||||||||||||||||||||||| ||||||||||| ||||||||| || |||||||||||
Sbjct 246 GATTCCTTCTCCTCCATGAGTCTTAACTCCGACGAACCTAATCAG-ACTTCTAATCAATC 304
Query 299 GCCTATTTCTCCCCCTACGCCCAATTTACCGGTGACGCCTCCTCCGTCCGTGCTTCATCT 358
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 305 GCCTCTTTCTCCCCCTACGCCCAATTTACCGGTGATGCCTCCTCCGTCCGTGCTTCATCT 364
Query 359 TTCCTTTAACCAGGACCATGCTTGCTTCGCTGTCGGCACTGATCGTGGCTTCCGGATCCT 418
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 365 TTCCTTTAACCAAGATCATGCTTGCTTCGCTGTCGGCACTGACCGTGGCTTCCGGATCCT 424
Query 419 TAATTGCGATCCGTTTCGCGAGATTTTCCGGCGTGATTTCGATCGTGGCGGTGGTGTTGC 478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TAATTGCGATCCCTTTCGCGAGATTTTCCGGCGTGATTTCGATCGTGGCGGTGGTGTTGC 484
Query 479 TGTGGTGGAGATGCTTTTCAGATGCAATATATTAGCCCTAGTGGGTGGTGGACCTGATCC 538
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 485 AGTCGTGGAGATGCTTTTCAGATGCAATATATTAGCCCTAGTTGGTGGCGGACCTGATCC 544
Query 539 TCAATATCCTCCTAATAAGGTTATGATTTGGGATGATCACCAGGGCCGATGTATCGGAGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCAATATCCTCCTAATAAGGTTATGATTTGGGATGATCACCAGGGCCGATGTATCGGAGA 604
Query 599 GCTCTCTTTCAGGTCCGATGTTAGATCGGTCCGGCTTAGGAGGGATCGGATTATTGTCGT 658
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 605 ACTCTCTTTCAGGTCCGATGTTAGATCCGTCCGGCTTAGGAGGGATCGGATTATTGTCGT 664
Query 659 TCTGGAGCAGAAGATTTTTGTGTACAATTTCTCCGACCTCAAGCTGATGCATCAGATTGA 718
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 665 TCTTGAGCAGAAGATTTTTGTCTACAATTTCTCTGACCTCAAGCTGATGCATCAGATTGA 724
Query 719 GACCATTGCGAACCCTAAGGGTTTGTGTGCTGTTTCTCAGGGTGTTGGTTCTATGGTATT 778
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 725 AACCATTGCCAACCCTAAGGGTTTGTGTGCTGTTTCTCAGGGTGTTGGTTCTATGGTTTT 784
Query 779 GGTATGTCCAGGTTTGCAGAAAGGTCAAGTTCGGATCGAGCACTACGCTTCTAAACGGAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGTATGTCCAGGTTTGCAGAAAGGTCAAGTTCGGATCGAGCACTACGCTTCTAAACGGAC 844
Query 839 CAAATTCGTCATGGCTCATGATTCGAGAATAGCTTGCTTCGCTCTCACGCAGGATGGGCA 898
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 845 CAAATTCGTCATGGCTCATGATTCCAGAATAGCTTGCTTCGCTCTCACGCAGGATGGCCA 904
Query 899 TTTGTTGGCAACAGCTAGCTCTAAGGGTACTCTGGTTCGGGTCTTCAATACTGTTGATGG 958
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 905 TTTGTTGGCCACTGCTAGCTCTAAGGGTACTCTGGTTCGGATCTTCAATACTGTTGATGG 964
Query 959 AACCTTGCGCCAAGAGTCCCACCGTGATGTGACTCTACAGGTTAGGAGGGGTGCGGATAG 1018
|||||||| |||||| || | | || ||| || |||||||||
Sbjct 965 TACCTTGCGTCAAGAG-------GT-A----A-------GG--AGG-GG--TGCGGATAG 1000
Query 1019 AGCGGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGA 1078
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGCAGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGA 1060
Query 1079 CAAAGGAACGGTCCATGTCTTTGGTCTCAAAGTCAACTCCGGATCTCAAGTGAAAGACTC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 CAAAGGAACGGTCCATGTCTTTGGTCTCAAAGTCAACTCCGGATCTCAAGTGAAAGACTC 1120
Query 1139 ATCCCGAATTGCACCTGATGCTACTCCCTCATCCCCATCGTCATCTCTGTCTTTATTCAA 1198
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1121 ATCCCGAATTGCACCTGATGCTACTCCCTCATCCCCATCGTCGTCTCTGTCTTTATTCAA 1180
Query 1199 AG---TGTTACCAAAGTATTTCAGCTCGGAGTGGTCGGTGGCTCAGTTCAGGTTGGTTGA 1255
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AGGAGTGTTACCGAGGTATTTCAGCTCGGAGTGGTCGGTGGCTCAGTTCAGGTTGGTTGA 1240
Query 1256 AGGAACTCAGTACATAGCCGCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCAT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 AGGAACTCAGTACATAGCCGCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCAT 1300
Query 1316 GGACGGGAGCTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGAGAAATGTCTCAGCT 1375
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1301 GGATGGGAGCTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGTGAAATGTCTCAGCT 1360
Query 1376 TGAGTACCACAACTGTTTGAAACCGCCTTCAGTTTTCTAAAAGCT--ACGTACTTATTCT 1433
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1361 TGAGTACCACAACTGTCTGAAACCGCCTTCAGTTTTCTAAAAGCTTTAC-TACTTATACT 1419
Query 1434 CTTTTGTTCCTTAtctctctctctctatctctctGCTACTTAAGCGGTGAGATTTG-TGT 1492
|||||||||||| ||||||| | | ||||||||||| |||||||||||||||| || |||
Sbjct 1420 CTTTTGTTCCTTCTCTCTCT-T-TATATCTCTCTGCAACTTAAGCGGTGAGATATGGTGT 1477
Query 1493 ATA 1495
|||
Sbjct 1478 ATA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5