BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486780
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62780.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 965 0.0
> AT3G62780.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:23221845-23222995 REVERSE LENGTH=1151
Length=1151
Score = 965 bits (522), Expect = 0.0
Identities = 584/614 (95%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 1 AGTCTTCTCTGCAACTCCTATATGTAATGCGTCTAGAGAGAAGCAGCTTTTGCATTGGGT 60
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 2 AGTCTTCTCTGCAACTCCTATATGTAATGTGTCTAGAGAGAACCAGCTTTTTCATTGGGT 61
Query 61 AATATCAAAATGGGGACGAGATCTCTAGAAATAAAGGTGACATCAGCAAAAGGGCTTAAG 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 62 AATATCAAAATGGGGACGAGATCTCTAGAAATAAATGTGACATCAGCAAAAGGGCTTAAG 121
Query 121 AAAGTGTCCAAGATGGATGTTTTTGTGGCCGTGAAGTTATCCGGTGATCCAAAATGCTCT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAAGTGTCGAAGATGGATGTTTTTGTGGCCGTGAAGTTATCCGGTGATCCAAAATGCTCT 181
Query 181 GACCACCGTGAGCAGCGGACACAAGTGGCAAGAGACGGTGGAACTAGCCCCAAATGGAGC 240
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 182 GACCACCGTGAGCAGCGGACACAAGCGGCAAGAGACGGTGGAACCAGCCCCAAATGGAGC 241
Query 241 AATGATGTCATGAAATTCA-CCATTGACCAAACCTTAGCTGAAGCTAACCGCCTTGTGAT 299
|||||||||||||| |||| || | ||||||| |||||| || |||||||||||||||||
Sbjct 242 AATGATGTCATGAAGTTCATCC-TCGACCAAAACTTAGCAGAGGCTAACCGCCTTGTGAT 300
Query 300 CACTTTCAATATCAAGTGCGAGCAACGTGGAGGAGTAGATAAAGACATCGGCGAGGTTCA 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACTTTCAAGATCAAGTGCGAGCAACGTGGAGGAGTAGATAAAGACATCGGCGAGGTTCA 360
Query 360 TGTTTC-GGTGAAAGAGCTTTTGGATCATCTCGGAAACGATAAGACCGGTCAAAGATACG 418
|||| | ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TGTT-CAGGTGAAAGAACTTCTGGATCATCTTGGAAACGATAAGACCGGTCAAAGATACG 419
Query 419 TCACATATCAAATCGGGAAAACCAAAGGCGATATTAGTTTCACTTATTCGTTCACAGGTC 478
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TCACATATCAAATCGGGAAATCCAAAGCCGATATTAGTTTCACTTATTCGTTCACAGGTC 479
Query 479 AGGTGGGGGTCCCGACCGGTGGCGGCTGCTCACGGTACGCAGCTCAAGTGCCGGTGCGTC 538
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 CGGTGGAGGTCCCGACCGGTGGCGGCTGCTCACGGTACGCAGCTCAAGCGCCGGTGCGTC 539
Query 539 CTGTATCGACCTACCGACCTGTTTCGAACGGACCCGTGTTGAGTCAGTTGAACGGACCCG 598
|||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||
Sbjct 540 CTGTATCGACCTACCGGCCCGTTTTGAACGGACCCATGTTGAGTCAGTTGAACGGACCCG 599
Query 599 TGTTGAGTCAGTTG 612
||||||| ||||||
Sbjct 600 TGTTGAGCCAGTTG 613
Score = 579 bits (313), Expect = 2e-164
Identities = 372/400 (93%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 568 GGACCCGTGTTGAGTCAGTTGAACGGACCCGTGTTGAGTCAGTTGCTTCCAAGTGTTGGA 627
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 GGACCCGTGTTGAGCCAGTTGAACGGACCCGTGTTGAGTCAGTTGCTACCAAGTGTTGGA 724
Query 628 TCGTTTAGTTACAACCACGTTCCTTCTCAGCCACCGATTTATCCACCACTTGCTCAGCCG 687
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 725 TCGTTTAGTTACAACCACGTTCCTTGTCAGCCACCGATTTATCCACCACTTGCTCAGCCT 784
Query 688 GAGATTCTTCCACCGGCATGCTTCCCCGGAGTGTATCCGATGAGTAACATGCCGGGAAGT 747
|||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 785 GAGATTCTTCCACCGGTATGCTTCCCCGGATTGTATCCGCCGAGTAACATGCCGGGAAGT 844
Query 748 CCACCCACAATGTATCCATCTATATTTCCTGGCTTATCATGTCCACCGGAAGGTTATTCT 807
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 845 CCACCCACAATGTATCAATCTATATTTCCTGGCTTATCATGTCCACCAGAAGGTTATTCA 904
Query 808 ACGGTGGCTCCGCCGCTGACACAACCGGGACTATATCCACCGATCAGTCCTTACAGATTT 867
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 905 ACGGTGGCTCCGCCGCTGACACAACCGGGACTATATCCACCGATGAGTCCTTACAGATAT 964
Query 868 TAATTAAATGTCAACGTCTCCAAGACTAGTCGTCGGTGAGGAGATTTGTAGATTCTGTTT 927
||||| | ||||||||||| ||| |||||||||||| |||||||||| |||| | |||
Sbjct 965 TAATTGATTGTCAACGTCTGGAAGCCTAGTCGTCGGTTTGGAGATTTGTTGATTTTATTT 1024
Query 928 AACTAATAATGATGTCATCA-TTCCCCCCAACTTGTGTGT 966
||||||| |||||||||| ||||||| |||||||||||
Sbjct 1025 AACTAAT---GATGTCATCAATTCCCCC-AACTTGTGTGT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5