BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486781
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62790.1 | Symbols: | NADH-ubiquinone oxidoreductase-relate... 774 0.0
> AT3G62790.1 | Symbols: | NADH-ubiquinone oxidoreductase-related
| chr3:23223061-23224308 REVERSE LENGTH=599
Length=599
Score = 774 bits (419), Expect = 0.0
Identities = 539/592 (91%), Gaps = 28/592 (5%)
Strand=Plus/Plus
Query 1 GGAAATCAGGCGAAGAAGACGACGAAATTTCTCCAGGATTTGGGATTCGAGAGAGAGAGT 60
||||||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 28 GGAAATCAGGCGAAGAAGACGACTAAATTTCTCC------TGGGATT--AGAGAGAGAG- 78
Query 61 G-A-GAAAAATGGCGTCGGGGTGGGGGATAACGGGAAACAAAGGGAGATGTTACGATTTC 118
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 79 GAAGGAAAAATGGCGTCGGGGTGGGGGATAACGGGAAACAAAGGGAGGTGTTACGATTTC 138
Query 119 TGGATGGATTTCAGCGAATGTATGTCTCATTGCAGAGAGCCCAAAGATTGTACACTTCTT 178
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 139 TGGATGGATTTCAGCGAATGTATGTCTCATTGCAGAGAGCCCAAAGACTGTACTCTTCTT 198
Query 179 CGTGAAGACTACCTCGAGTGTCTTCACCATTCCAAAGAGTTCCAACGAAGAAACAGGATA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CGTGAAGACTACCTCGAGTGTCTTCACCATTCCAAAGAGTTCCAACGAAGAAACAGGATA 258
Query 239 TACAAAGAGGAACAACGTAAACTAAGAGCTGCTTCAAGGAAAGGCGAAGAAACCGGGGAT 298
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 TACAAAGAAGAACAACGTAAACTAAGAGCTGCATCAAGGAAAGGCGAAGAAACCGGGGAT 318
Query 299 GGGACTCATACTCAGCACTAGTCAGAGAATTTTTCTCCTATCTCCAAAGTTTGCATCTTT 358
|||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 319 GGGACTCATACTCATCACTAGTC-GAGA-TTTTCCTCCTATCTCCAAAGTTTGCATCTTT 376
Query 359 AGAAGAATAAA-AAGAGGTTCTTTGAAGATTTCTGTATGTTGTG--CCAAACTTCATTTG 415
|||||||||| || || ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 377 CGAAGAATAAACAAAAGTTTCTT-GAAGATTTCTGTATCTTGTGTGCCAAACTTCATTTG 435
Query 416 ATTGTTTTCACTTTCTGTTTGCTCTTGCAATGGAttttttcttt-ttt-CTT-GTCTATT 472
|| || |||| ||||||| |||||||||||||||| | | ||| ||| |||||||
Sbjct 436 ATCGTATTCA------GTTTGCTTTTGCAATGGATTTTTT-TGTCTTTGCTTTGTCTATT 488
Query 473 ACCTTTGACTGAGTTGTAATATGCCTTTGGCTTGCTCATCAAACACAGACTCCTTCTTTT 532
||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 489 ACCTTTGACCGAGTTGTAATATGCCTTTGGCTA-CTCGTCAAACACAGACTCCTTCTTTA 547
Query 533 ATGGTAATAATTACTCTTACAGGTATATTAAAATCATAATTCGAAAGATATT 584
|||||||||||||||| ||||| |||||||||||||| |||||| ||| |||
Sbjct 548 ATGGTAATAATTACTCCTACAGTTATATTAAAATCATTATTCGAGAGACATT 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28080888173
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5