BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486783
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding prote... 1144 0.0
> AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein
4 | chr3:23225592-23227512 REVERSE LENGTH=1302
Length=1302
Score = 1144 bits (619), Expect = 0.0
Identities = 789/869 (91%), Gaps = 19/869 (2%)
Strand=Plus/Plus
Query 294 AAATTGCTCAGAAAGAGAATTCTATGTTACCAGTTTATGCAACTGCTACTTCTGGTCCAT 353
||||||| |||||||||| |||| |||||||| |||||||||||||||| ||||||||||
Sbjct 343 AAATTGCACAGAAAGAGAGTTCTCTGTTACCATTTTATGCAACTGCTACATCTGGTCCAT 402
Query 354 CGCATTCGCCTACTTTTATTTCGACTGTTGAGTTTGCTGGGAAGGTTTTCACCGGAGAAG 413
||||| |||||||||||| ||| ||||||||||||||||| || ||||||| |||||||
Sbjct 403 CGCATGCGCCTACTTTTACTTCAACTGTTGAGTTTGCTGGTAAAGTTTTCAGTGGAGAAG 462
Query 414 AGGCAAAAACCAAAAAGTTGGCTGAAATGAGTGCTGCTAAAATTGCATTCATGAGTATAA 473
|||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 463 AGGCGAAAACCAAAAAGTTGGCTGAAATGAGCGCTGCTAAAGTTGCATTCATGAGTATCA 522
Query 474 AAAATGGGAACTCGAACCAAACCTCATCGCCTTCTTTGTCTTGTGAGAGACAAGAAGCTG 533
||||||||||||||||||| ||| ||||||| ||||| || ||||||||||||||| ||
Sbjct 523 AAAATGGGAACTCGAACCAGACCGGATCGCCTACTTTGCCTAGTGAGAGACAAGAAGATG 582
Query 534 TAAGTTCAAATGTGAAGAGCAGTCTACAAGAGATCCATTCCCAA-C--CTTCCAAGGTGG 590
||| |||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||
Sbjct 583 TAAATTCAAATGTGAAGAGCAGTCCACAAGAGATCCATTCTCAACCTTCTTCCAAGGTGG 642
Query 591 TGATGACCCCTGATGCCCCATCAAAGTTGATGAAAGTGTCTGAAGATGAATGTCCAGATC 650
|||||||||||||| ||||||||||| ||| |||||| ||||||||||| ||||||||
Sbjct 643 TGATGACCCCTGATACCCCATCAAAGGGGATTAAAGTGAATGAAGATGAATTTCCAGATC 702
Query 651 TTCATAG-TGCACCAGCCAGTAATGCTAAGGAAATTAACGTTGCTTTGCATGTGCCTGAA 709
||||| | |||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 703 TTCAT-GATGCACCAGCCAGTAATGCTAAGGAGATTAACGTTGCTTTGAATGAGCCTGAG 761
Query 710 AATCCTGCAAACGATGGTACTCTTAATGCACCAACTACTGATGGTATGAAGATGAACATT 769
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 762 AATCCTACAAACGATGGTACTCTTAGTGCACTAACTACTGATGGTATGAAGATGAACATT 821
Query 770 GCTGCTTCTTCTTCT-CCTATACCTCAGAATCCTACAAACGTTGTTACTCTTAATGCATC 828
||| ||||||||| | ||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 822 GCTTCTTCTTCTT-TGCCTATACCTCACAATCCTACAAACGTTATTACTCTTAATGCACC 880
Query 829 ATCTACCAATGGTATCAAGAGGAACATTGCTGCTTGTTCTTCGCGTATGCCTCAGCATCC 888
| || |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 881 AGCTGCCAATGGTATCAAGAGGAACATTGCTGCTTGTTCTTCGTGGATGCCTCAGAATCC 940
Query 889 CACAAACGATGGTAGTGAAACATCATCA--TGT-GTAGATGAGAGTGAGAAGAAGAAGCT 945
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 941 CACAAACGATGGTAGTGAAACATCATCATGTGTAGTAGATGAGAGTGAGAAAAAGAAGCT 1000
Query 946 CATAATGGGAACTGGCCACCTGAGTATACCAACTGGCCAACATGTAGTTTGTCGTCCGTG 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1001 CATAATGGGAACTGGCCACCTGAGTATACCAACTGGCCAACATGTAGTTTGTCGCCCATG 1060
Query 1006 GAACCCGGAGATAACTCTTCCTCAAGACGCGGAGATGCTCTTTAGGGATGATAGATTTAT 1065
|||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1061 GAACCCCGAGATAACTCTTCCTCAAGACGCGGAGATGCTCTTTAGAGATGATAAATTTAT 1120
Query 1066 TGCCTATCGTCTCGGGAAGCCATAAAGACATCATC--CTT-GATGCATAA-A-GTGTAGA 1120
||||||||||| | |||||||||| ||||||||| ||| ||||||||| | |||||||
Sbjct 1121 AGCCTATCGTCTTGTGAAGCCATAACGACATCATCATCTTTGATGCATAATAAGTGTAGA 1180
Query 1121 GA-ATA-T-T-AAGCTAAGCTATATCTCA 1145
|| | | | | ||| ||||||||||||||
Sbjct 1181 GATAGAATGTTAAGGTAAGCTATATCTCA 1209
Score = 353 bits (191), Expect = 2e-96
Identities = 248/274 (91%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 24 CTCGAGTGTGTCTTCACCATTAC-AA-AG---AGATAAAGATGGATCATGTATACAAGGG 78
||||| |||||||||||||| | || || ||||| ||||||||||||||||||| ||
Sbjct 39 CTCGA-AGTGTCTTCACCATTTCAAAGAGTTTAGATAGAGATGGATCATGTATACAAAGG 97
Query 79 TCAATTGCAAGCATATGCCCTGAAACATAATCTGGAGCTACCGGTGTATGCCAATGAGCG 138
|||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||| |
Sbjct 98 TCAACTGCAAGCGTATGCCCTGCAACATAATCTGGAGCTACCAGTGTATGCGAATGAGAG 157
Query 139 AGAAGGGCCTCCTCATGCTCCTCGATTTAGATGTAAGGTTACATTCTGTGGACAGACTTT 198
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 158 AGAAGGGCCTCCTCATGCTCCTAGATTTAGATGTAATGTTACATTCTGTGGACAGACTTT 217
Query 199 CCAGAGC-CTGGAATTCTTTCCGACACTTAAATCGGCTGAACATGCCGCTGCGAAAATTG 257
||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 218 CCAGAGCTCTG-AATTCTTTCCGACACTAAAATCGGCTGAACATGCCGCTGCAAAAATTG 276
Query 258 CA-TTGGCTTCATTGACGCCACAGAGTCCAGAGG 290
|| ||| |||| ||||||||||| ||||||||||
Sbjct 277 CAGTTG-CTTCTTTGACGCCACAAAGTCCAGAGG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5