BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486784

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62810.1 | Symbols:  | complex 1 family protein / LVR family...   654    0.0  


> AT3G62810.1 | Symbols:  | complex 1 family protein / LVR family 
protein | chr3:23227682-23228398 FORWARD LENGTH=620
Length=620

 Score =  654 bits (354),  Expect = 0.0
 Identities = 479/535 (90%), Gaps = 26/535 (5%)
 Strand=Plus/Plus

Query  2    GACGGCGGAGGTTGAAAGGGGAAGGAGTAGAAATGGTGACCGGAGAAGCATTGATCGCGT  61
            ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct  50   GACGGCGGAGGTTGAAAGGGGAAAGAGCAGAAATGGTGACCGGAGAAGCGTTGATCGCGT  109

Query  62   ACAGAGCTCTGCTCAAGGCTAC-AAGAAAATCATTCGCTGGTGATACTGAGATGCTAAAA  120
            ||||||| ||||||| ||| || ||| ||||||||||| || ||||| ||||||||||||
Sbjct  110  ACAGAGCACTGCTCAGGGCAACAAAG-AAATCATTCGCCGGAGATACCGAGATGCTAAAA  168

Query  121  GCTTCAGCGTCCGAGATCCGTAAGAAATTCGAAGAGAACCGCCTCGTGGCTTCCAACTCC  180
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  169  GCTTCGGCGTCCGAGATCCGTAAGAAATTCGAAGAGAATCGCCTCGTGGCTTCTAACTCC  228

Query  181  GACATCACTCGCCTTCTCGAAGAGGCGCGTGAAGCCACGCAGTTCATTTCCACCATGATC  240
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  229  GACATCACTCGCCTTCTAGAAGAGGCGCGTGAAGCGACGCAGTTCATTTCCACCATGATC  288

Query  241  GTCCAGGCCAAACTAAACGAACGCGGCGGATACGAGGTGAAAGCAAGTCAGGAACACGCA  300
            |||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||| 
Sbjct  289  GTCCAGGCTAAACTCAACGAACGCGGCGGATATGAGATGAAAGCAAGTCAGGAACACGCG  348

Query  301  GGAGCTACTTTGGAGCTTCCATCAGAGGAGATGCTTCGGAAATAATCTGTATGAGTAAGT  360
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||
Sbjct  349  GGAGCTACTTTGGAGCTTCCATCAGAGGAGATGCTTCGGAAAAAATCTGTATGAGT--GT  406

Query  361  CAGTCTGAAATTGGATTACTTGTCCCTTACTCGTTTTGTTTAATCGGG-----T---TC-  411
             |||||||||||||||||||| ||||||||||||||||||| ||||||     |   || 
Sbjct  407  AAGTCTGAAATTGGATTACTTCTCCCTTACTCGTTTTGTTTGATCGGGAAAGGTGGATCC  466

Query  412  T-------CT-----GTTTGTTTTCTCTCTTCACGGCCAAATTTAATCAATAAGAAA-TC  458
            |       ||     ||||||||||||| ||||||||||| || ||||||||||||  ||
Sbjct  467  TTTTTATGCTTCTCTGTTTGTTTTCTCTTTTCACGGCCAAGTTGAATCAATAAGAAGCTC  526

Query  459  CTTACATACATTTTTGGATGAGATTCGTCCATTTCAGATCAAGAATTACAGAATT  513
             ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  527  TTTACATACATTTTTGGATGAGATTCGTCCATTTCAAAACAAGAATTACAGAATT  581



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5