BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486786
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62830.1 | Symbols: UXS2, ATUXS2, AUD1 | NAD(P)-binding Ross... 2499 0.0
AT2G47650.2 | Symbols: UXS4 | UDP-xylose synthase 4 | chr2:1953... 1155 0.0
> AT3G62830.1 | Symbols: UXS2, ATUXS2, AUD1 | NAD(P)-binding Rossmann-fold
superfamily protein | chr3:23232386-23235567 FORWARD
LENGTH=1705
Length=1705
Score = 2499 bits (1353), Expect = 0.0
Identities = 1511/1586 (95%), Gaps = 16/1586 (1%)
Strand=Plus/Plus
Query 80 TTTTC-ACTCTCTCG-TTCAAGTTCTCGAATTCAATTT-TGAGGTTTGGAGATGGCGAGC 136
||||| | ||| ||| ||| || ||| ||||||||||| |||||||||||||||||||||
Sbjct 104 TTTTCTA-TCTTTCGATTCTAGATCTAGAATTCAATTTGTGAGGTTTGGAGATGGCGAGC 162
Query 137 GAGCTGATCAATCGGCGACACGAGGCGGATCAACCAATCGCCGATGCTTATTACCCGAAA 196
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 163 GAGCTGATCAATCGGCGACACGAGACGGATCAACCAACCGCCGATGCTTATTACCCGAAA 222
Query 197 CCAATCAAACCATGGTTCATGGTGACTCGTCCGATGCGTTACATGCTCCGTGAACAGAGA 256
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCAATCAAACCATGGTTCACGGTGACTCGTCCGATGCGTTACATGCTCCGTGAACAGAGA 282
Query 257 CTTATCTTCGTTCTCGTTGGCATTGCAATCGCTACTTTGGTTTTCACAATTTTCCCTCGC 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CTTATCTTCGTTCTCGTTGGCATTGCAATCGCTACTTTGGTTTTCACAATTTTCCCTCGC 342
Query 317 TCCACCCAATCAAGCGCTTACTCGGATCCGTTCTCCGGTTACGGAATCAGACCCGACGAA 376
||||| ||||||| | ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 343 TCCACACAATCAACCCCTTACTCGGATCCTTTCTCCGGTTACGGAATCCGACCCGACGAA 402
Query 377 TCGTACGTTCCGGCGATACAAGCTCAGAGGAAACCTAGCCTCGAGTACCTGAACCGGATC 436
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TCGTACGTTCCGGCTATACAAGCTCAGAGGAAACCTAGCCTCGAGTACCTGAACCGGATC 462
Query 437 GGAGCAACAGGCGGGAAAATCCCACTCGGATTGAAACGCAAAGGGCTAAGAGTCGTCGTC 496
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 463 GGAGCAACAGGCGGGAAAATCCCACTGGGATTGAAACGCAAAGGGCTAAGAGTGGTTGTG 522
Query 497 ACCGGTGGTGCTGGATTCGTTGGATCGCATCTTGTGGATCGTTTGATGGCGAGAGGAGAC 556
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 523 ACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTGGATCGTTTGATGGCTAGAGGAGAT 582
Query 557 ACTGTGATCGTTGTTGACAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTC 616
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 ACTGTGATTGTTGTTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTC 642
Query 617 AGTAACCCTAATTTTGA-ACTTATCCGTCACGATGTTGTTGAGCCGATTCTTCTTGAGGT 675
||||||||||| ||||| | | |||||||||||||| |||||||||||||||||||||||
Sbjct 643 AGTAACCCTAACTTTGAGA-TGATCCGTCACGATGTGGTTGAGCCGATTCTTCTTGAGGT 701
Query 676 TGATCAGATCTATCATCTGGCTTGCCCTGCCTCTCCTGTTCATTACAAATTCAATCCCGT 735
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 702 TGATCAGATCTACCATTTGGCTTGCCCTGCTTCTCCTGTTCATTACAAATTCAATCCCGT 761
Query 736 CAAGACTATCAAGACGAATGTGGTTGGAACACTGAACATGCTTGGTTTGGCTAAGCGAGT 795
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 762 CAAGACTATCAAGACGAATGTGGTTGGAACATTGAACATGCTTGGTTTGGCTAAGCGAGT 821
Query 796 CGGTGCTAGATTTCTTCTGACGAGTACCAGTGAGGTCTATGGGGATCCTCTGCAGCATCC 855
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 822 TGGGGCTAGATTTCTTCTGACGAGTACCAGTGAGGTTTATGGTGATCCTCTGCAGCATCC 881
Query 856 TCAGGTCGAGACTTACTGGGGCAACGTTAATCCAATTGGTGTTCGTAGTTGCTACGATGA 915
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 882 TCAGGTTGAGACTTACTGGGGCAACGTTAATCCCATTGGTGTTCGTAGTTGCTACGATGA 941
Query 916 AGGAAAACGTACGGCAGAGACGTTGACCATGGACTATCACAGAGGTGCCAATGTTGAGGT 975
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 942 AGGAAAACGTACGGCAGAGACGTTGACCATGGACTATCACCGAGGTGCCAATGTTGAGGT 1001
Query 976 CAGGATTGCTAGGATCTTCAACACCTATGGTCCAAGAATGTGTATAGATGATGGGCGTGT 1035
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CAGAATTGCTAGGATCTTCAACACCTATGGTCCAAGAATGTGTATAGATGATGGGCGTGT 1061
Query 1036 TGTCAGCAACTTCGTTGCACAGGCACTAAGGAAAGAACCATTGACTGTTTACGGTGATGG 1095
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1062 TGTTAGTAACTTCGTTGCACAGGCACTAAGGAAAGAGCCATTGACTGTTTACGGTGATGG 1121
Query 1096 GAAGCAGACAAGGAGTTTCCAATTTGTTTCTGATCTGGTTGAAGGTTTGATGAGATTGAT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1122 GAAGCAGACAAGGAGTTTCCAATTTGTTTCTGATCTGGTTGAAGGTTTGATGAGACTGAT 1181
Query 1156 GGAAGGAGAACATGTCGGGCCATTTAACCTCGGTAACCCTGGTGAATTCACAATGCTCGA 1215
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1182 GGAAGGAGAACATGTCGGCCCATTCAACCTCGGTAACCCTGGTGAATTCACGATGCTCGA 1241
Query 1216 GCTCGCTAAGGTGGTCCAAGAGACGATTGATCAAAACGCAAACATAGAGTTCAGACCAAA 1275
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 1242 GCTCGCTAAGGTGGTCCAAGAGACAATTGATCCGAATGCAAACATAGAGTTCAGACCAAA 1301
Query 1276 CACAGAAGACGACCCTCACAAGAGAAAGCCTGACATCACAAAGGCCAAAGAGCTTTTAGG 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CACAGAAGACGACCCTCACAAGAGAAAGCCTGACATCACAAAGGCCAAAGAGCTTTTAGG 1361
Query 1336 TTGGGAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TTGGGAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCA 1421
Query 1396 ACGTGTCTTTGGTGACCAGAGAG-AAGGCTCCTCCGCAGCTGCAACCACCACCAAGACAA 1454
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1422 ACGTGTCTTTGGTGACCAGA-AGGAAGGCTCCTCCGCAGCTGCAACCACCACCAAGACAA 1480
Query 1455 CTTCAGCTTGAGCAAATGCAGAATC-GAGTAGCAGCCACTGCGGCTGGTAGTGGGTTGAT 1513
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1481 CTTCAGCTTGAGCAAATGCAGAATCTGAGTAGCAGCCACTGCGGCTGGTAGTGGGTTTAT 1540
Query 1514 AACAAAAATGCAAGACCTT-GCTTCGTTTCTATTTATTTCGTTTTTGATTTCTGTTTTGA 1572
||||||| ||||||| | | | ||| ||| |||||||||| ||||||||||||||||||
Sbjct 1541 AACAAAATTGCAAGAGCGTCGTTTC-TTTAAATTTATTTCGCTTTTGATTTCTGTTTTGA 1599
Query 1573 TAATCGTGTAAAATTAGAGTAAGAATTTGGTACCTTTACTTACTACTACTATTCATGAAC 1632
|||||||||||| |||||||||||||||||||||||||||||||||| | | |||| ||
Sbjct 1600 TAATCGTGTAAACGTAGAGTAAGAATTTGGTACCTTTACTTACTACTA-T-T-CATGGAC 1656
Query 1633 CTCTCACTACAGTTTTAAAAGAAAAA 1658
||| |||||||||||||||||||||
Sbjct 1657 CTC--ACTACAGTTTTAAAAGAAAAA 1680
> AT2G47650.2 | Symbols: UXS4 | UDP-xylose synthase 4 | chr2:19538610-19541473
REVERSE LENGTH=1600
Length=1600
Score = 1155 bits (625), Expect = 0.0
Identities = 1109/1334 (83%), Gaps = 68/1334 (5%)
Strand=Plus/Plus
Query 126 AGATGGCGAGC-GAGCTGATC-AATCGGCGACACGAGGCGGATCAACCA-ATCGCCG-AT 181
|||||||| | ||||||| | || |||||||||||| || |||||| | || | ||
Sbjct 108 AGATGGCG-TCTGAGCTGA-CAAACCGGCGACACGAGATAGAGCAACCAGA-AGCGGAAT 164
Query 182 GCTTATTACCCGAAA-CCAATCAAA-CCATGGTTCATGGTGACTCGTCCGATGCGTTACA 239
||||||| || ||| || || ||| ||||||||| | | || ||||||||| |||||||
Sbjct 165 -CTTATTATCC-AAAGCCGAT-AAAGCCATGGTTCGTAGCGATTCGTCCGATCCGTTACA 221
Query 240 TGCTCCGTGAACAGAGACTTATCTTCGTTCTCGTTGGCATTGCAATCGCTAC-TTTGGTT 298
||||| | ||||||||||| ||||||| ||||| |||||||| ||||| || || ||
Sbjct 222 TGCTCAGAGAACAGAGACTCGTCTTCGTCCTCGTCGGCATTGCCATCGCCACATTAGG-A 280
Query 299 TTCACAAT-TT-TCC--CTCGCTCC-A-C-CCAATCAA-GCGCTTAC-TC--GGATCCG- 346
|||||||| || ||| || ||| | | |||| ||| | ||||| | |||||||
Sbjct 281 TTCACAATCTTCTCCAAATC-ATCCAACCACCAACCAATTC-CTTACGACGTGGATCCGC 338
Query 347 TTCTCCGGTTACGGAAT-CAGACCCGACG-AATCGTA-CGTTCCGGCGATACAAGCTCAG 403
|| ||||| |||||||| | || | || | |||||| | | || ||| || | |||
Sbjct 339 TT-TCCGGATACGGAATGC-GATCGGA-GTCATCGTATC-TGCCAGCG--ACGA-TTCAT 391
Query 404 AGGAAACCTAGCCTCGAGTACCTGAACCGGATCGGAGCAACAGGCGGGAAAATCCCACTC 463
| ||| || ||| |||||||| ||| |||||||||| | ||||||| |||||||| ||
Sbjct 392 AAGAAGCCAAGCATCGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTA 451
Query 464 GGATTGAAACGCAAAGGGCTAAGAGTCGTCGTCACCGGTGGTGCTGGATTCGTTGGATCG 523
|| |||||||| |||| |||||| || || || || ||||| || || ||||| || ||
Sbjct 452 GGCTTGAAACGGAAAGTGCTAAGGGTTGTTGTGACAGGTGGAGCAGGGTTCGTCGGGTCA 511
Query 524 CATCTTGTGGATCGTTTGATGGCGAGAGGAGAC-ACTGTGATCGTTGTTGACAATTTCTT 582
|| || ||||| || |||||||| |||||||| || |||||||| || |||||||||||
Sbjct 512 CACCTGGTGGACCGGTTGATGGCTCGAGGAGACAAC-GTGATCGTGGTCGACAATTTCTT 570
Query 583 CACTGGAAGGAAAGAGAACGTTATGCACCATTTCAGTAACCCTAATTTTGA-ACTTATCC 641
||| ||||||||||||||||| ||||||||||||| |||||||||||| || | | ||||
Sbjct 571 CACGGGAAGGAAAGAGAACGTGATGCACCATTTCAATAACCCTAATTTCGAGA-TGATCC 629
Query 642 GTCACGATGTTGTTGAGCCGATTCTTCTTGAGGTTGATCAGATCTATCATCTGGCTTGCC 701
|||||||||| || |||||||| ||||| ||||||||||||||||| ||| |||| ||||
Sbjct 630 GTCACGATGTAGTGGAGCCGATCCTTCTAGAGGTTGATCAGATCTACCATTTGGCATGCC 689
Query 702 CTGCCTCTCCTGTTCATTACAAATTCAATCCCGTCAAGACTATCAAGACGAATGTGGTTG 761
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 690 CTGCTTCTCCTGTTCACTACAAATTCAATCCCGTCAAGACTATCAAGACGAATGTGGTGG 749
Query 762 GAACACTGAACATGCTTGGTT-TGGCTAAGCGAGTCGGTGCTAGATTTCTT-CTGACGAG 819
||||| |||||||| |||| | || ||| |||| || || ||||| ||| ||||||||
Sbjct 750 GAACATTGAACATG-TTGGGACTAGCGAAGAGAGTGGGAGCAAGATT-CTTGCTGACGAG 807
Query 820 TACCAGTGAGGTCTATGGGGATCCTCTGCAGCATCCTCAGGTCGAGACTTACTGGGGCAA 879
||| |||||||||||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 808 TACGAGTGAGGTCTATGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAA 867
Query 880 CGTTAATCCAATTGGTGTTCGTAGTTGCTACGATGAAGGAAAACGTACGGCAGAGACGTT 939
||||||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||
Sbjct 868 CGTTAATCCCATCGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTT 927
Query 940 GACCATGGACTATCACAGAGGTGCCAATGTTGAGGTCAGGATTGCTAGGATCTTCAACAC 999
||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 928 GACCATGGACTATCACAGAGGCGCTAATGTTGAGGTTAGGATTGCTAGGATATTCAACAC 987
Query 1000 CTATGGTCCAAGAATGTGTATAGATGATGGGCGTGTTGTCAGCAACTTCGTTGCACAGGC 1059
||||| ||||| |||||||| ||||| || ||||| || |||||||||||||| |||||
Sbjct 988 TTATGGCCCAAGGATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGC 1047
Query 1060 ACTAAGGAAAGAACCATTGACTGTTTACGGTGATGGGAAGCAGACAAGGAGTTTCCAATT 1119
| |||| ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1048 ATTAAGAAAAGAGCCTTTGACTGTTTATGGTGATGGTAAGCAGACTAGGAGTTTCCAGTT 1107
Query 1120 TGTTTCTGATCTGGTTGAAGGTTTGATGAGATTGATGGAAGGAGAACATGTCGGGCCATT 1179
||| ||||||||||| |||||| ||||||| |||||||| |||||||||||||| |||||
Sbjct 1108 TGTCTCTGATCTGGTGGAAGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATT 1167
Query 1180 TAACCTCGGTAACCCTGGTGAATTCACAATGCTCGAGCTCGCTAAG-G--TGGT------ 1230
|||||| |||||||| ||||||||||| |||||||||||||||||| | ||||
Sbjct 1168 TAACCTTGGTAACCCCGGTGAATTCACCATGCTCGAGCTCGCTAAGTGGATGGTGGGTGA 1227
Query 1231 -C--------CAAGAGACGATTGATCAAAACGCAAACATAGAGTTCAGACCAAACACAGA 1281
| |||||||| ||||| | |||||||| |||||||||||||||||||||||
Sbjct 1228 GCAGGTGGTTCAAGAGACAATTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGA 1287
Query 1282 AGACGACCCTCACAAGAG-AAAGCCTGACATCACAAAGGCCAAAGAGCTT-TTAGGTTGG 1339
|||||||| |||||||| ||| || |||||||||||||||||||||||| || ||||||
Sbjct 1288 GGACGACCCACACAAGAGGAAA-CCAGACATCACAAAGGCCAAAGAGCTTCTT-GGTTGG 1345
Query 1340 GAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCAACGT 1399
||||||||||| |||| || || ||||| || || ||||||||||||||||||||||||
Sbjct 1346 GAACCAAAGGTGGCTCTACGCCAAGGACTCCCACTTATGGTCAAAGATTTCCGTCAACGT 1405
Query 1400 GTCTTTGGTGACCA 1413
|||||||| |||||
Sbjct 1406 GTCTTTGGCGACCA 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81927289440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5