BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486792
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62870.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 1328 0.0
AT2G47610.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 872 0.0
> AT3G62870.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr3:23242665-23244353 REVERSE LENGTH=1048
Length=1048
Score = 1328 bits (719), Expect = 0.0
Identities = 786/819 (96%), Gaps = 1/819 (0%)
Strand=Plus/Plus
Query 1 CGCTCTTGCTCTCCGCCGTCTGTC-TACCTCCAGAAATCGTCGACTACAATGGCACCCAA 59
||||||||||||| |||||||||| ||||||||||| ||| |||| ||||||||||| ||
Sbjct 32 CGCTCTTGCTCTCAGCCGTCTGTCTTACCTCCAGAAGTCGACGACAACAATGGCACCGAA 91
Query 60 GAAAGGAGTCAAAGTAGCTTCCAAGAAGAAGCCGGAGAAAGTTACCAACCCATTGTTTGA 119
||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 92 GAAGGGAGTTAAAGTGGCTTCAAAGAAGAAGCCGGAGAAAGTTACCAACCCATTGTTTGA 151
Query 120 GAGACGCCCAAAGCAATTCGGTATCGGTGGTGCTTTGCCTCCTAAGAAGGATCTTTCTCG 179
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 152 GAGACGCCCAAAGCAATTCGGTATTGGTGGCGCTTTGCCTCCTAAGAAGGATCTTTCTCG 211
Query 180 TTACATCAAATGGCCTAAGTCCATCCGTCTTCAAAGGCAGAAGCGTATCCTTAAGCAGAG 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTACATCAAATGGCCTAAGTCAATCCGTCTTCAAAGGCAGAAGCGTATCCTTAAGCAGAG 271
Query 240 GTTGAAGGTTCCTCCAGCTCTTAACCAGTTTACCAAGACTCTCGATAAGAATCTCGCAAC 299
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||
Sbjct 272 GTTGAAGGTTCCTCCAGCTCTTAACCAGTTCACCAAGACCCTTGATAAGAATCTCGCCAC 331
Query 300 CAGCCTCTTCAAGATTCTTTTGAAGTATAGGCCAGAGGACAAAGCTGCAAAGAAGGATCG 359
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 332 CAGCCTCTTCAAGATTCTTCTGAAGTATAGGCCAGAGGACAAAGCCGCAAAGAAGGAACG 391
Query 360 CCTTTTGAAGAAGGCTCAAGCTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCAT 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CCTTTTGAACAAGGCTCAAGCTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCAT 451
Query 420 TGTTGTCAAGTATGGTCTCAACCATGTCACTTACCTCATCGAGCAGAACAAGGCACAGCT 479
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 452 TGTTGTTAAGTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGAACAAGGCACAGCT 511
Query 480 TGTGGTCATTGCACACGATGTTGACCCTATCGAGTTGGTCGTCTGGCTACCTGCACTGTG 539
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 512 TGTGGTCATTGCACACGATGTTGACCCTATCGAGTTGGTGGTCTGGTTACCTGCACTCTG 571
Query 540 CAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGGGGAAATCTCGTCTTGGAGCGGTTGT 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 572 CAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGGGAAAATCTCGTCTTGGAGCGGTCGT 631
Query 600 TCACCAGAAGACTGCTGCTGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TCACCAGAAGACTGCTGCTGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGA 691
Query 660 GTTCAGCAAAATCCTCGAGGCTATCAAGGCTAACTTCAACGACAAGTACGAGGAGTACAG 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 692 GTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTACAG 751
Query 720 GAAGAAGTGGGGAGGTGGCATAATGGGATCTAAGTCTCAAGCCAAGACCAAAGCTAAGGA 779
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 752 GAAGAAGTGGGGAGGTGGCATAATGGGATCCAAGTCTCAAGCCAAGACCAAAGCTAAGGA 811
Query 780 GAGGGTTCTTGCTAAAGAGGCTGCCCAGAGATTGAACTA 818
||||||| ||||||| ||||||||||||||| |||||||
Sbjct 812 GAGGGTTATTGCTAAGGAGGCTGCCCAGAGAATGAACTA 850
Score = 62.1 bits (33), Expect = 9e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 820 GTTCTCTGCTATGAAACATATGATAATGTTTTTGTT 855
|||||||||||||||||||||||||||| |||||||
Sbjct 866 GTTCTCTGCTATGAAACATATGATAATGGTTTTGTT 901
> AT2G47610.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr2:19529744-19531659 FORWARD LENGTH=1142
Length=1142
Score = 872 bits (472), Expect = 0.0
Identities = 686/789 (87%), Gaps = 15/789 (2%)
Strand=Plus/Plus
Query 41 CGACTACAATGGCACCC-AAGAAAGGAGTCAAAGTAGCTTCCAAGAAGAAG--C-CGGAG 96
|||| |||||||| ||| ||||||||||| || |||||| | ||||||||| | |||||
Sbjct 103 CGACGACAATGGC-CCCGAAGAAAGGAGTGAAGGTAGCTGCTAAGAAGAAGACCGCGGAG 161
Query 97 AAAGTTACCAACCCAT-TGTTTGAGA-GACGCCCAAAGCAATTCGGTATCGGTGGTGCTT 154
|||||| | ||||| | | || |||| || | || |||||||||||||| ||||| ||||
Sbjct 162 AAAGTTTCAAACCC-TCTATTCGAGAGGA-GGCCTAAGCAATTCGGTATTGGTGGAGCTT 219
Query 155 TGCCTCCTAAGAAGGATCTTTCTCGTTACATCAAATGGCCTAAGTCCATCCGTCTTCAAA 214
| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||
Sbjct 220 TACCTCCTAAGAAGGATCTCTCTCGCTACATCAAATGGCCCAAATCCATCCGTCTTCAAA 279
Query 215 GGCAGAAGCGTATCCTTAAGCAGAGGTTGAAGGTTCCTCCAGCTCTTAACCAGTTTACCA 274
|||| ||| | ||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 280 GGCAAAAGAGGATCCTGAAGCAGAGGTTGAAGGTCCCTCCAGCTCTTAACCAATTCACCA 339
Query 275 AGACTCTCGATAAGAATCTCGCAACCAGCCTCTTCAAGATTCTTTTGAAGTATAGGCCAG 334
||||||| || |||||||| || ||||||||||||||| | ||| ||||||| |||||||
Sbjct 340 AGACTCTTGACAAGAATCTTGCTACCAGCCTCTTCAAGGTCCTTCTGAAGTACAGGCCAG 399
Query 335 AGGACAAAGCTGCAAAGAAGGATCGCCTTTTGAAGAAGGCTCAAGCTGAGGCAGAAGGAA 394
| ||||||||||| |||||||| || ||| | |||||||| |||||||| || || ||||
Sbjct 400 AAGACAAAGCTGCCAAGAAGGAGCGTCTTGTAAAGAAGGCCCAAGCTGAAGCTGAGGGAA 459
Query 395 AGCCTGCTGAATCCAAGAAGCCCATTGTTGTCAAGTATGGTCTCAACCATGTCACTTACC 454
||||| |||| || |||||||||||||| ||||| || || ||||||||||| || ||||
Sbjct 460 AGCCTTCTGAGTCTAAGAAGCCCATTGTAGTCAAATACGGCCTCAACCATGTGACCTACC 519
Query 455 TCATCGAGCAGAACAAGGCACAGCTTGTGGTCATTGCACACGATGTTGACCCTATCGAGT 514
|||| |||||||||||||| || ||||| || ||||| || ||||| ||||| || ||||
Sbjct 520 TCATTGAGCAGAACAAGGCCCAACTTGTTGTTATTGCTCATGATGTCGACCCAATTGAGT 579
Query 515 TGGTCGTCTGGCTACCTGCACTGTGCAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGG 574
|||| |||||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 580 TGGTTGTCTGGTTGCCTGCTCTGTGCAGGAAGATGGAAGTCCCGTACTGCATTGTCAAGG 639
Query 575 GGAAATCTCGTCTTGGAGCGGTTGTTCACCAGAAGACTGCTGCT-GCCTTGTGCTTGACC 633
| ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 640 GCAAATCTCGTCTTGGAGCGGTTGTTCACCAGAAGACTGCTTCTTGC-TTGTGTTTGACC 698
Query 634 ACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAAATCCTCGAGGCTATCAAGGCTAAC 693
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 699 ACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAAC 758
Query 694 TTCAACGACAAGTACGAGGAGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCTAAG 753
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 759 TTCAATGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAGGCATAATGGGATCTAAG 818
Query 754 TCTCAAGCCAAGACCAAAGCTAAGGAGAGGGTTCTTGCTAAAG-AGGCTGCCCAGAG-AT 811
||||| || |||||||| || ||||| || ||| |||| |||| |||||||||| || ||
Sbjct 819 TCTCAGGCAAAGACCAAGGCAAAGGAAAGAGTTATTGC-AAAGGAGGCTGCCCAAAGGAT 877
Query 812 TGAACTAAG 820
||| ||||
Sbjct 878 -GAATTAAG 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5