BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486794

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62880.1 | Symbols: ATOEP16-4 | Mitochondrial import inner m...   767    0.0  


> AT3G62880.1 | Symbols: ATOEP16-4 | Mitochondrial import inner 
membrane translocase subunit Tim17/Tim22/Tim23 family protein 
| chr3:23244662-23246055 REVERSE LENGTH=814
Length=814

 Score =  767 bits (415),  Expect = 0.0
 Identities = 520/567 (92%), Gaps = 21/567 (4%)
 Strand=Plus/Plus

Query  1    AATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTCACCGTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  42   AATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTC  101

Query  61   GAATCAGTTATCCGCGTCGCGACGGCCGGTGGATTATACGGGTTGTGCGCCGGACCTCGT  120
            || |||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  102  GAGTCAGTTCTCCGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCGGACCTCGT  161

Query  121  GACGCTCGTAAAATAGGTTTAAGCGGCGCATCTCAAGCTTCCTTTGTGGCGAAATCCATT  180
            ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct  162  GACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATT  221

Query  181  GGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACCCATTGTGGG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  222  GGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGG  281

Query  241  CTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  282  CTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCG  341

Query  301  GGAGCAGCTGTTGCTATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTC  360
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  342  GGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTC  401

Query  361  GTCTCTGCTTTCAGTGTTTTGGCTAATTGCACCAGGACAGAG--CCCAAACAACAATAAT  418
            ||||||||||| |||||||||||||||||||||||||||||   ||||||||||| ||||
Sbjct  402  GTCTCTGCTTTTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACAACACTAAT  461

Query  419  TAAGGTCTTAGACAAGTC-ATTCATCAAGACACTGTGT--AATTGGAAAGTGAAGATCAA  475
            ||||||||| |||||||| |||||  | || ||||| |  ||||||||  ||||||||||
Sbjct  462  TAAGGTCTTTGACAAGTCCATTCA--A-GAAACTGTATGGAATTGGAACTTGAAGATCAA  518

Query  476  TAC-CGCGACTCTCC--T-C--T--T-TT-AGTTGGCTGAACCGGTGGATGGT-CGT-TT  523
            ||| |  ||||||||  | |  |  | || ||||||||||||| ||||||||| | | ||
Sbjct  519  TACACT-GACTCTCCGGTTCGATCCTATTTAGTTGGCTGAACCCGTGGATGGTTCTTCTT  577

Query  524  TTCTATGGACCACAATTTTGGTCTTGT  550
            |||||| ||||||| ||||||||||||
Sbjct  578  TTCTATAGACCACACTTTTGGTCTTGT  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5