BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486797

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62920.1 | Symbols:  | unknown protein; Has 25 Blast hits to...   555    1e-157


> AT3G62920.1 | Symbols:  | unknown protein; Has 25 Blast hits 
to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:23260662-23261293 FORWARD 
LENGTH=420
Length=420

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 366/395 (93%), Gaps = 16/395 (4%)
 Strand=Plus/Plus

Query  1    ACTCAATTTCATCTCTTCCTCCGGCGACGATGTCGATTTACAGGATCGCAAGAGCCTTAC  60
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  27   ACTCAATTTCTTCTCTTCCTCCGGCGACGATGTCGATTTACAGGATCGCTAGAGCTTTAC  86

Query  61   CCTTCTCCGGGATCTTAAGGCAGCTTGAGCAAGAAGCTGAAACTGTGATCAATGTTCTGC  120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  87   CCTTCTCCGGGATCTTAAGGCAGCTTGAGAAAGAAGCTGAAACTGTGATCAATGTTCTGC  146

Query  121  AACCTGGACCTTTGGGAATCATAGAGCACAAGTTCTCGGCTCAAGAGATTCGGGAGGCAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  147  AACCTGGACCTTTGGGAATCATAGAGCACAAGTTCTCGGCTCAAGAGATTCGGGAAGCAA  206

Query  181  AAGCTACAGTTTCTAGAGCAGTTGATAATTGGCGAAGACATTCTGAGGTTGAGCATGCAA  240
            ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct  207  AAGCTACAGTTTCTAGAGCTGTTGATAGTTGGCGAAGACATTCTGAGGTCGAGCATGCAA  266

Query  241  ATGGCCTTTTAAAAGATTACATTTACAAGTGAAGATGTGAGTAAAAATCTCTACTTTTGT  300
            ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct  267  ATGGCCTTTTAAAAGATTACATTTACAAGTGAAGAAGTTAGTGAAAATCTCTACTTTTGT  326

Query  301  TT-T--C----------ATGGCTGATGATGAATAAA-GGCCTTTCATTTTGTTGAACAAT  346
            || |  |          |||||||||||| |||||| |||||||||||||||||||||||
Sbjct  327  TTGTTTCTTCTTTTCTCATGGCTGATGATAAATAAAAGGCCTTTCATTTTGTTGAACAAT  386

Query  347  CTTTAGAG-ATCAATGAAAAAGCAAATCTTTCTCT  380
            |||||| | ||||||| ||||||||||||||||||
Sbjct  387  CTTTAG-GTATCAATGGAAAAGCAAATCTTTCTCT  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17895318644


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5